Hg_chrom1_TN10mRNA_853
Organism: Heterodera glycines Gene Locus: chr1:11754741-11763813 Feature type: polypeptideProtein Sequence
Length: 1,881
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.855 | 0.918 | 0.403 | 1.621 | 1.172 | 0.437 | 0.851 | 1.619 | 1.473 | 1.579 | 1.939 | 1.905 | 0.307 | 0.814 | 0.805 | 0.488 | 0.58 | 0.859 | 0.766 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_817
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_853
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRSLFNENTKEEMQKRKIV,KKMGKNWQKFDNETKKMKL,KEKENGEKIKSEKKKSKKKGKKKNKKGKAE
|
— | — | — | — |
1-19
|
0.986
|
1.000
|
0.000
|
0.000
|
0.545
|
0.183
|
0.006
|
0.610
|
0.164
|
0.150
|
0.193
|
0.018
|
0.105
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002983
|
2.000
|
1.000
|
Hsc_gene_4407.t1
|
— | — | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
KAF7843926
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.774|GO:0110165_0.774|GO:0005622_0.730|GO:0016020_0.691|GO:0043226_0.678|GO:0043229_0.657|GO:0043227_0.611|GO:0008150_0.609|GO:0043231_0.582|GO:0003674_0.530|GO:0009987_0.510
|
IPR007012+1593-1733+|IPR011068+1737-1846+|IPR043519+1389-1549_1401-1569+
|
— |
PF04928+1593-1733+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1383-1462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1018-1150
|
2.000
|
1-1017;1151-1881
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
220348.630
|
7.000
|
9.000
|
30.888
|
12.281
|
52.047
|
47.953
|
16.108
|
14.779
|
37.533
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1164.339
|
2.472
|
8.021
|
649.309
|
238.611
|
45.590
|
19.956
|
8.620
|
481.492
|
4368.146
|
2702.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.474
|
7.913
|
6.447
|
-1.475
|
-2.374
|
-1.184
|
-2.507
|
1.348
|
— | — |
-4.078
|
— | — |