SCN Proteipedia

Hg_chrom1_TN10mRNA_856

Organism: Heterodera glycines Gene Locus: chr1:11767636-11772733 Feature type: polypeptide

Protein Sequence

Length: 666

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.117	0.733	1.529	0.155	1.877	1.617	0.733	0.976	0.901	1.015	0.569	1.325	0.667	1.299	1.348	1.18	0.615	0.751	0.462	0.53	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_819	—	—	1.444	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	5.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom1_TN10mRNA_856	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.362	0.071	0.026	0.779	0.215	0.489	0.309	0.044	0.205	0.099

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005748	2.000	0.000	0.000	—	—	A7MBP4.2 Intraflagellar transport protein 46 homolog [Danio rerio]	KAI1707983.1 intraflagellar transport protein 46 like protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0042073	GO:0005575_0.932\|GO:0110165_0.927\|GO:0005622_0.873\|GO:0016020_0.836\|GO:0008150_0.812\|GO:0043226_0.803\|GO:0071944_0.793\|GO:0005886_0.774\|GO:0009987_0.769\|GO:0043227_0.742\|GO:0032991_0.693\|GO:0016043_0.668\|GO:0071840_0.668\|GO:0051179_0.650\|GO:0042995_0.644\|GO:0098590_0.644\|GO:0120025_0.640\|GO:0006810_0.634\|GO:0051234_0.634\|GO:0051641_0.612\|GO:0006996_0.605\|GO:0051649_0.583\|GO:0044085_0.579\|GO:0007010_0.578\|GO:0008104_0.578\|GO:0030030_0.578\|GO:0033036_0.578\|GO:0070727_0.578\|GO:0005929_0.577\|GO:0030990_0.577\|GO:0120036_0.577\|GO:0022607_0.576\|GO:0046907_0.567\|GO:0016192_0.565\|GO:0007017_0.564\|GO:0000226_0.555\|GO:0007018_0.552\|GO:0051640_0.552\|GO:0051656_0.552\|GO:0030031_0.550\|GO:0070925_0.550\|GO:0033365_0.549\|GO:0120031_0.547\|GO:0010970_0.546\|GO:0030705_0.546\|GO:0099111_0.546\|GO:0048193_0.545\|GO:0051648_0.544\|GO:0051650_0.543\|GO:0001578_0.542\|GO:0006903_0.542\|GO:0031503_0.542\|GO:0035082_0.542\|GO:0035735_0.542\|GO:0042073_0.542\|GO:0044782_0.542\|GO:0048199_0.542\|GO:0060271_0.542\|GO:0061512_0.542\|GO:0097712_0.542\|GO:1905349_0.542	IPR022088+371-649_412-639+	—	PF12317+412-639+Intraflagellar_transport_complex_B_protein_46_C_terminal	—	PTHR13376+371-649+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-416	1.000	417-666	4uzz_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.834	73678.840	4.243	-55.500	31.982	6.757	53.453	46.547	12.312	19.670	51.502

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	281.106	473.174	336.965	196.114	69.891	63.144	89.227	128.107	460.235	375.931	412.061

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.719	-1.408	-0.672	-1.521	—	0.509	0.922	—	—	—	—	—	—

No JSON data available for plots.

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