Hg_chrom1_TN10mRNA_858
Organism: Heterodera glycines Gene Locus: chr1:11779694-11782688 Feature type: polypeptideProtein Sequence
Length: 549
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.652 | 0.994 | 1.507 | 0.88 | 1.495 | 0.304 | 1.275 | 1.579 | 1.452 | 1.049 | 1.393 | 1.67 | 0.736 | 1.041 | 0.703 | 0.597 | 0.662 | 1.541 | 1.018 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_821
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_858
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-22
|
0.973
|
1.000
|
0.000
|
0.000
|
0.580
|
0.171
|
0.008
|
0.687
|
0.131
|
0.235
|
0.128
|
0.056
|
0.149
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001067
|
2.000
|
3.000
|
Hsc_gene_15951.t1;Hsc_gene_7528.t1;Hsc_gene_7528.t2
|
— | — | — |
ESS32019.1 putative Bardet-Biedl syndrome 5 [Toxoplasma gondii VEG];KFG34067.1 putative Bardet-Biedl syndrome 5 [Toxoplasma gondii GAB2-2007-GAL-DOM2];KFG40617.1 putative Bardet-Biedl syndrome 5 [Toxoplasma gondii FOU];PUA84455.1 putative Bardet-Biedl syndrome 5 [Toxoplasma gondii TgCATBr9];RQX71251.1 putative Bardet-Biedl syndrome 5 [Toxoplasma gondii CAST]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004842
|
GO:0003674_0.750|GO:0005575_0.690|GO:0110165_0.690|GO:0005622_0.586|GO:0005488_0.552|GO:0005737_0.512
|
IPR001841+488-528+|IPR013083+461-539+|IPR044247+485-539+
|
— |
PF13920+485-533+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR47355+485-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-549
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
64283.400
|
8.057
|
14.000
|
25.319
|
14.026
|
46.812
|
53.188
|
14.572
|
10.747
|
42.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
408.098
|
2.162
|
122.359
|
98.536
|
33.914
|
9.815
|
11.981
|
12.153
|
961.646
|
955.100
|
957.905
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.605
|
5.384
|
— |
-1.566
|
-1.777
|
— | — | — | — |
-3.155
|
-4.335
|
— | — |