Hg_chrom1_TN10mRNA_859
Organism: Heterodera glycines Gene Locus: chr1:11783303-11789620 Feature type: polypeptideProtein Sequence
Length: 749
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 1.304 | 1.092 | 1.427 | 0.912 | 1.198 | 0.699 | 1.602 | 0.831 | 1.028 | 0.748 | 1.492 | 1.372 | 1.104 | 1.09 | 1.163 | 1.226 | 0.587 | 1.438 | 0.785 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_822
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_859
|
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRQK,RQKRKR,RRYENVFGFPSRKAKN
|
— | — | — | — |
1-29
|
0.782
|
1.000
|
0.000
|
0.000
|
0.169
|
0.091
|
0.022
|
0.168
|
0.177
|
0.102
|
0.137
|
0.096
|
0.145
|
0.913
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005750
|
1.000
|
1.000
|
Hsc_gene_4475.t1
|
Hsc_gene_4475.t1
|
— |
P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]
|
KAI1721618.1 common central domain of tyrosinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.854|GO:0008150_0.802|GO:0005575_0.724|GO:0110165_0.721|GO:0005622_0.622|GO:0016020_0.610|GO:0005488_0.600|GO:0008152_0.581|GO:0043226_0.568|GO:0043229_0.544|GO:0009987_0.541|GO:0043227_0.522|GO:0005737_0.514|GO:0003824_0.513|GO:0009058_0.503
|
IPR002227+205-397_223-240_252-257_357-368_377-395_378-389+|IPR003582+618-652_619-655_705-723+|IPR008922+171-449_174-455+|IPR050316+116-662+
|
— |
PF00264+205-397+Common_central_domain_of_tyrosinase|PF01549+618-652_705-723+ShK_domain-like
|
— |
PTHR11474+116-662+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
541-610
|
2.000
|
1-540;611-749
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
84477.980
|
6.688
|
3.000
|
24.967
|
12.684
|
50.868
|
49.132
|
13.485
|
11.482
|
53.004
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
365.729
|
4.770
|
11.329
|
11.352
|
7.930
|
797.016
|
1118.903
|
26.082
|
0.000
|
858.545
|
490.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.116
|
— | — |
6.679
|
0.500
|
-5.059
|
5.573
|
-10.551
|
4.362
|
-6.389
|
— | — |