Hg_chrom1_TN10mRNA_860
Organism: Heterodera glycines Gene Locus: chr1:11790656-11804458 Feature type: polypeptideProtein Sequence
Length: 1,629
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 1.813 | 0.859 | 0.445 | 1.678 | 1.181 | 0.424 | 0.952 | 1.514 | 1.344 | 1.823 | 1.481 | 1.449 | 0.354 | 0.539 | 1.07 | 0.664 | 0.521 | 1.181 | 0.867 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_823
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_860
|
30-Not_Clustered
|
0.562
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKLRLKIFGHCAKKPKC,KKVSKRNEAEEMLRTRTK,SQKAEKKLKKINKKQPKS,RKKRKEEEEAATSKGKKKC,KKRKEEEEAATSKGKKKCD,KRKEEEEAATSKGKKKCDK,RKEEEEAATSKGKKKCDKK,KRTDKTPTKLKMTNKNKEK
|
— | — | — | — |
1-18
|
0.964
|
1.000
|
0.000
|
0.000
|
0.565
|
0.162
|
0.005
|
0.631
|
0.114
|
0.097
|
0.185
|
0.022
|
0.088
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001695
|
1.000
|
3.000
|
Hsc_gene_4473.t1;Hsc_gene_4473.t2;Hsc_gene_4473.t3
|
Hsc_gene_4474.t1
|
— | — |
NXU77979.1 PAPOG polymerase [Oreotrochilus melanogaster]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.763|GO:0110165_0.761|GO:0005622_0.725|GO:0016020_0.680|GO:0043226_0.667|GO:0043229_0.650|GO:0008150_0.631|GO:0043227_0.607|GO:0043231_0.583|GO:0003674_0.540|GO:0009987_0.534
|
IPR007012+1333-1470+|IPR043519+1148-1294_1191-1321+
|
— |
PF04928+1333-1470+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1141-1570+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
533-874
|
2.000
|
1-532;875-1629
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
189219.030
|
7.350
|
13.500
|
31.369
|
11.602
|
55.310
|
44.690
|
16.575
|
14.794
|
39.779
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1600.650
|
3.511
|
88.979
|
112.350
|
43.849
|
12.060
|
11.849
|
9.923
|
1539.041
|
5742.617
|
3941.084
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.433
|
4.861
|
0.443
|
-1.390
|
-1.848
|
— | — | — |
-2.004
|
-3.602
|
-6.579
|
— | — |