Hg_chrom1_TN10mRNA_862
Organism: Heterodera glycines Gene Locus: chr1:11811623-11818681 Feature type: polypeptideProtein Sequence
Length: 833
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.503 | 2.01 | 0.829 | 1.573 | 0.64 | 1.17 | 1.372 | 1.2 | 0.827 | 1.038 | 0.527 | 1.412 | 1.067 | 1.385 | 0.955 | 1.012 | 1.26 | 0.327 | 1.293 | 1.165 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_825
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-27
|
0.832
|
1.000
|
0.000
|
0.000
|
0.113
|
0.024
|
0.023
|
0.360
|
0.198
|
0.161
|
0.105
|
0.024
|
0.210
|
0.839
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005751
|
1.000
|
1.000
|
Hsc_gene_4472.t1
|
Hsc_gene_4472.t1
|
— |
P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]
|
KAK6102372.1 Common central domain of tyrosinase family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.912|GO:0008150_0.769|GO:0005575_0.724|GO:0110165_0.712|GO:0005488_0.633|GO:0003824_0.600|GO:0005622_0.586|GO:0016020_0.580|GO:0009987_0.545|GO:0043226_0.542|GO:0008152_0.534|GO:0043229_0.533|GO:0005737_0.522|GO:0043227_0.517|GO:0043231_0.501
|
IPR002227+260-451_278-295_307-312_412-423_432-450_433-444+|IPR003582+702-740_703-739_749-810+|IPR008922+222-520_225-512+|IPR050316+185-533+
|
SM00254+702-740_749-810+
|
PF00264+260-451+Common_central_domain_of_tyrosinase
|
— |
PTHR11474+185-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-216;580-703
|
3.000
|
1-146;217-579;704-833
|
6su9_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.949
|
91408.960
|
7.126
|
8.000
|
18.968
|
11.885
|
46.939
|
53.061
|
10.564
|
8.403
|
57.743
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
461.723
|
80.884
|
29.585
|
24.723
|
16.019
|
1642.879
|
1834.675
|
301.013
|
8.453
|
540.034
|
312.213
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.684
|
-1.847
|
— |
-0.660
|
6.699
|
— |
-2.551
|
2.749
|
-6.125
|
— |
-4.807
|
— | — |