Hg_chrom1_TN10mRNA_864
Organism: Heterodera glycines Gene Locus: chr1:11822406-11830126 Feature type: polypeptideProtein Sequence
Length: 979
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.283 | 0.78 | 0.704 | 0.936 | 2.279 | 0.9 | 1.43 | 0.953 | 0.856 | 0.635 | 1.863 | 1.021 | 0.982 | 0.917 | 1.532 | 1.172 | 0.805 | 0.471 | 0.3 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_827
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
GKGKANGGKAKG,KKQQKQNGTEMADEKGKGK
|
21-61
|
0.910
|
13-63
|
1.000
|
1-26
|
0.892
|
1.000
|
1.000
|
0.000
|
0.219
|
0.023
|
0.007
|
0.265
|
0.229
|
0.211
|
0.306
|
0.032
|
0.780
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002984
|
1.000
|
2.000
|
Hsc_gene_4468.t1;Hsc_gene_4468.t2
|
— | — | — |
KAF7635784.1 ZP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001507+40-340+
|
— | — | — |
PTHR46560+35-553+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
325-558;648-979
|
2.000
|
1-324;559-647
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
106603.780
|
6.617
|
2.000
|
21.450
|
8.172
|
53.728
|
46.272
|
11.542
|
9.908
|
54.852
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1659.568
|
767.923
|
317.139
|
212.242
|
478.029
|
1057.976
|
1485.977
|
2673.085
|
26.246
|
4618.787
|
2650.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.507
|
-1.992
|
-0.469
|
1.139
|
1.161
|
0.500
|
1.238
|
-0.707
|
— | — | — | — | — |