Hg_chrom1_TN10mRNA_865
Organism: Heterodera glycines Gene Locus: chr1:11835592-11838056 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.703 | 0.811 | 1.318 | 1.327 | 1.96 | 0.379 | 1.433 | 1.84 | 0.818 | 1.11 | 1.686 | 1.504 | 0.735 | 0.845 | 0.864 | 0.522 | 0.627 | 2.205 | 0.843 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_828
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.488
|
0.179
|
0.004
|
0.655
|
0.153
|
0.245
|
0.140
|
0.014
|
0.090
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005752
|
1.000
|
1.000
|
Hsc_gene_4465.t1
|
Hsc_gene_4465.t1
|
— |
Q8RX22.1 MND1-interacting protein 1 [Arabidopsis thaliana]
|
XP_065906482.1 baculoviral IAP repeat-containing protein 7-B-like isoform X3 [Dysidea avara]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.881|GO:0009987_0.821|GO:0065007_0.777|GO:0005575_0.764|GO:0050789_0.764|GO:0050794_0.755|GO:0110165_0.755|GO:0005622_0.709|GO:0003674_0.668|GO:0050896_0.612|GO:0005737_0.590|GO:0008152_0.521|GO:0044238_0.514|GO:0043170_0.507|GO:0048519_0.502
|
IPR001841+266-301_266-302+|IPR013083+246-314+|IPR051652+232-313+
|
SM00184+266-301+
|
PF13920+263-307+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR12183+232-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
215-258
|
2.000
|
1-214;259-314
|
2yho_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
36896.050
|
6.741
|
1.500
|
26.752
|
14.013
|
50.955
|
49.045
|
14.331
|
12.420
|
41.720
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
skyblue3
|
211.532
|
1.677
|
31.460
|
112.531
|
64.906
|
9.033
|
9.110
|
6.068
|
539.866
|
432.508
|
478.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.998
|
5.926
|
1.947
|
-0.827
|
-2.831
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.