Hg_chrom1_TN10mRNA_869
Organism: Heterodera glycines Gene Locus: chr1:11850037-11852123 Feature type: polypeptideProtein Sequence
Length: 237
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 2.257 | 0.46 | 2.91 | 1.547 | 0.541 | 0.653 | 0.633 | 0.938 | 0.684 | 0.703 | 1.986 | 1.992 | 1.055 | 0.947 | 1.326 | 1.176 | 0.767 | 0.0 | 0.124 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_831
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-15
|
0.990
|
0.889
|
0.000
|
0.000
|
0.381
|
0.164
|
0.039
|
0.308
|
0.076
|
0.038
|
0.044
|
0.052
|
0.126
|
0.932
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005754
|
1.000
|
1.000
|
Hsc_gene_4462.t1
|
— | — | — |
CRK91692.1 CLUMA_CG005339, isoform A [Clunio marinus]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002919+125-179+|IPR036084+122-180+
|
— |
PF01826+125-179+Trypsin_Inhibitor_like_cysteine_rich_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
55-107
|
2.000
|
1-54;108-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
26230.690
|
4.975
|
-4.500
|
22.363
|
8.861
|
50.633
|
49.367
|
10.549
|
11.814
|
57.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
11.836
|
53.741
|
9.790
|
2.989
|
5.638
|
16.865
|
2.643
|
7.443
|
3.084
|
12.305
|
8.353
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.690
|
-4.302
|
-1.597
|
— |
1.598
|
-2.662
|
-1.291
|
-1.347
|
— | — | — | — | — |