Hg_chrom1_TN10mRNA_871
Organism: Heterodera glycines Gene Locus: chr1:11861227-11869702 Feature type: polypeptideProtein Sequence
Length: 575
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.294 | 0.607 | 0.664 | 0.24 | 0.609 | 1.427 | 0.952 | 1.217 | 1.198 | 1.387 | 0.29 | 1.125 | 1.063 | 0.87 | 0.887 | 1.242 | 1.283 | 1.318 | 1.204 | 0.972 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_833
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.430
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.139
|
0.061
|
0.008
|
0.167
|
0.694
|
0.511
|
0.672
|
0.001
|
0.429
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002985
|
2.000
|
1.000
|
Hsc_gene_4459.t1
|
Hsc_gene_19421.t1;Hsc_gene_19421.t2
|
— |
O12976.1 Presenilin-1 [Xenopus laevis]
|
KAI1724264.1 presenilin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016485|GO:0042500
|
GO:0008150_0.946|GO:0005575_0.927|GO:0110165_0.927|GO:0009987_0.854|GO:0016020_0.847|GO:0071944_0.806|GO:0005886_0.801|GO:0065007_0.765|GO:0050896_0.738|GO:0050789_0.734|GO:0050794_0.708|GO:0051179_0.691|GO:0051716_0.653|GO:0005622_0.645|GO:0006810_0.624|GO:0051234_0.624|GO:0005737_0.602|GO:0023052_0.579|GO:0007154_0.576|GO:0007165_0.545|GO:0008152_0.542|GO:0032502_0.542|GO:0048856_0.542|GO:0044238_0.535|GO:0032501_0.527|GO:0019538_0.525|GO:0043170_0.525|GO:0003674_0.524|GO:0048869_0.504|GO:0030154_0.502
|
IPR001108+31-573_72-564_82-92_237-244_254-271_280-287+|IPR006639+127-561+|IPR042524+470-567+
|
SM00730+127-561+
|
PF01080+72-564+Presenilin
|
G3DSA:1.10.472.100:FF:000003+470-566+Presenilin
|
PTHR10202+31-573+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65;312-482
|
2.000
|
66-311;483-575
|
7y5z_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
61805.520
|
6.616
|
1.000
|
16.000
|
11.130
|
40.696
|
59.304
|
8.696
|
7.304
|
55.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
905.888
|
805.734
|
872.299
|
1135.952
|
1400.008
|
1636.080
|
942.992
|
881.983
|
339.041
|
830.836
|
620.067
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.358
|
0.489
|
0.270
|
0.240
|
-0.787
|
-0.996
|
0.237
|
— | — | — | — | — |
No JSON data available for plots.