Hg_chrom1_TN10mRNA_874
Organism: Heterodera glycines Gene Locus: chr1:11884581-11886782 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.344 | 1.21 | 0.841 | 0.199 | 1.349 | 0.593 | 0.895 | 1.445 | 0.771 | 0.937 | 1.226 | 1.02 | 0.963 | 1.556 | 0.708 | 0.495 | 0.379 | 1.489 | 1.334 | 1.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_835
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.594
|
0.274
|
0.105
|
0.540
|
0.158
|
0.138
|
0.058
|
0.080
|
0.219
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001697
|
3.000
|
1.000
|
Hsc_gene_4456.t1
|
Hsc_gene_4456.t1
|
— |
P31729.2 OV-16 antigen [Onchocerca volvulus]
|
XP_062562284.1 protein D3-like [Armigeres subalbatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.723|GO:0110165_0.716|GO:0008150_0.643|GO:0016020_0.584|GO:0005622_0.574|GO:0043226_0.551|GO:0005737_0.526|GO:0043227_0.510
|
IPR008914+52-166+|IPR035810+10-170_29-169+|IPR036610+5-173_10-171+
|
— |
PF01161+52-166+Phosphatidylethanolamine-binding_protein
|
— |
PTHR11362+10-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-173
|
5tvd_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
19118.790
|
6.645
|
0.500
|
27.168
|
12.717
|
40.462
|
59.538
|
14.451
|
12.717
|
53.179
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
341.482
|
1152.100
|
407.880
|
58.472
|
92.004
|
268.325
|
256.960
|
255.283
|
148.539
|
448.445
|
319.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.730
|
-4.439
|
-2.693
|
0.621
|
1.561
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.