Hg_chrom1_TN10mRNA_875
Organism: Heterodera glycines Gene Locus: chr1:11889314-11894695 Feature type: polypeptideProtein Sequence
Length: 584
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.394 | 0.934 | 0.709 | 1.084 | 1.273 | 0.571 | 0.771 | 1.332 | 1.573 | 0.908 | 1.41 | 1.475 | 0.593 | 1.363 | 0.758 | 0.561 | 0.908 | 1.712 | 0.907 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_836
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRSKRQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.126
|
0.422
|
0.159
|
0.172
|
0.606
|
0.109
|
0.156
|
0.582
|
0.121
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005757
|
1.000
|
1.000
|
Hsc_gene_4455.t1
|
Hsc_gene_4455.t1
|
— |
A1ZAI5.1 Putative fatty acyl-CoA reductase CG5065 [Drosophila melanogaster]
|
KAH7724479.1 male sterility protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0080019
|
GO:0008150_0.847|GO:0005575_0.814|GO:0110165_0.811|GO:0003674_0.787|GO:0005622_0.722|GO:0016020_0.686|GO:0005737_0.660|GO:0003824_0.650|GO:0043226_0.632|GO:0008152_0.618|GO:0043229_0.601|GO:0016491_0.575|GO:0043227_0.571|GO:0016620_0.565|GO:0016903_0.565|GO:0043231_0.549|GO:0009058_0.531|GO:0044238_0.506
|
IPR013120+22-291+|IPR026055+14-453+|IPR033640+365-454_365-456+|IPR036291+15-305+
|
— |
PF03015+365-456+Male_sterility_protein|PF07993+22-291+Male_sterility_protein
|
G3DSA:3.40.50.720:FF:000143+8-350+Fatty_acyl-CoA_reductase
|
PTHR11011+14-453+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
548-584
|
1.000
|
1-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
67354.700
|
8.330
|
10.500
|
25.856
|
12.158
|
45.548
|
54.452
|
14.212
|
11.644
|
43.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
738.251
|
618.929
|
611.853
|
846.228
|
997.300
|
1426.102
|
901.264
|
791.372
|
283.652
|
694.718
|
518.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.246
|
0.315
|
0.577
|
0.205
|
0.530
|
-0.652
|
-0.950
|
0.328
|
— | — | — | — | — |
No JSON data available for plots.