Hg_chrom1_TN10mRNA_876
Organism: Heterodera glycines Gene Locus: chr1:11897234-11902641 Feature type: polypeptideProtein Sequence
Length: 796
(Signal peptide: 1-45)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 2.016 | 1.028 | 0.477 | 1.193 | 1.16 | 0.658 | 1.508 | 1.061 | 0.917 | 1.332 | 1.108 | 0.558 | 0.749 | 1.102 | 1.561 | 1.05 | 0.59 | 0.387 | 0.369 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_837
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_876
|
17-ppJ2_pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
KKAVSLGNDKFRRRRRAI,QKKVTEKKAVSLGNDKFRRRRR
|
— | — | — | — |
1-45
|
0.715
|
0.873
|
0.000
|
0.000
|
0.368
|
0.240
|
0.013
|
0.369
|
0.197
|
0.138
|
0.159
|
0.315
|
0.406
|
0.218
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002986
|
1.000
|
2.000
|
Hsc_gene_4454.t1;Hsc_gene_4454.t2
|
— | — | — |
KAI3415254.1 hypothetical protein GPALN_004869 [Globodera pallida]
|
MDQ1336343
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
50-222;313-384;441-796
|
3.000
|
1-49;223-312;385-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
87857.510
|
8.990
|
23.000
|
30.025
|
6.784
|
60.553
|
39.447
|
17.211
|
12.814
|
53.894
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2282.737
|
5.339
|
547.027
|
995.823
|
77.706
|
3.021
|
1.619
|
20.194
|
12186.853
|
227.813
|
5353.116
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.447
|
7.402
|
0.972
|
-3.713
|
-4.672
|
— |
2.670
|
-3.510
|
5.638
|
-3.441
|
— | — | — |