Hg_chrom1_TN10mRNA_877
Organism: Heterodera glycines Gene Locus: chr1:11905686-11911230 Feature type: polypeptideProtein Sequence
Length: 645
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.19 | 1.071 | 1.657 | 0.853 | 0.795 | 0.738 | 1.705 | 1.068 | 1.173 | 0.869 | 1.277 | 1.249 | 1.222 | 1.044 | 1.218 | 0.915 | 0.634 | 1.312 | 0.912 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_838
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_877
|
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.997
|
1.000
|
0.000
|
0.000
|
0.169
|
0.159
|
0.046
|
0.340
|
0.202
|
0.176
|
0.303
|
0.198
|
0.262
|
0.705
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005758
|
1.000
|
1.000
|
Hsc_gene_4453.t1
|
Hsc_gene_4453.t1
|
— |
Q19673.5 Putative tyrosinase-like protein tyr-3 [Caenorhabditis elegans]
|
KAI1721618.1 common central domain of tyrosinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.890|GO:0008150_0.757|GO:0005575_0.721|GO:0110165_0.720|GO:0003824_0.610|GO:0005622_0.610|GO:0016020_0.599|GO:0005488_0.582|GO:0043226_0.556|GO:0008152_0.554|GO:0005737_0.552|GO:0043229_0.537|GO:0043227_0.533|GO:0009987_0.527|GO:0043231_0.517
|
IPR002227+181-378_200-217_229-234_339-350_359-377_360-371+|IPR003582+525-562+|IPR008922+148-447_150-437+|IPR050316+115-558+
|
— |
PF00264+181-378+Common_central_domain_of_tyrosinase
|
— |
PTHR11474+115-558+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-645
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
72423.340
|
7.279
|
10.000
|
25.271
|
12.713
|
47.597
|
52.403
|
14.264
|
11.008
|
52.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
113.955
|
30.443
|
251.222
|
64.264
|
19.000
|
38.005
|
186.967
|
254.703
|
13.432
|
171.753
|
103.901
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.812
|
0.941
|
-1.855
|
-1.793
|
1.017
|
2.313
|
2.628
|
— | — | — | — | — | — |