SCN Proteipedia

Hg_chrom1_TN10mRNA_881

Organism: Heterodera glycines Gene Locus: chr1:11922786-11927139 Feature type: polypeptide

Protein Sequence

Length: 475

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.273	0.636	1.033	0.726	1.333	1.188	0.627	1.368	1.076	1.764	0.766	1.734	1.228	0.486	1.633	0.782	0.621	0.734	0.972	0.495	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_842	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom1_TN10mRNA_881	5-Not_Clustered	0.679

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRATLWADGLLHAFKKLRQ	—	—	—	—	—	—	0.000	—	—	0.388	0.255	0.131	0.651	0.091	0.212	0.191	0.099	0.105	0.053

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005761	1.000	1.000	Hsc_gene_4447.t1	Hsc_gene_4447.t1	—	Q60Q90.1 Adenylosuccinate lyase [Caenorhabditis briggsae]	KAF7640234.1 Lyase_1 domain-containing protein [Meloidogyne graminicola]	No	0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824	GO:0008150_0.894\|GO:0009987_0.818\|GO:0003674_0.726\|GO:0008152_0.712\|GO:0005575_0.688\|GO:0044237_0.686\|GO:0110165_0.676\|GO:0044238_0.667\|GO:0009058_0.641\|GO:0005622_0.637\|GO:0044281_0.623\|GO:0003824_0.619\|GO:0006139_0.595\|GO:0005737_0.571\|GO:0034654_0.565\|GO:0006793_0.556\|GO:0006796_0.556\|GO:1901135_0.555\|GO:0019637_0.545\|GO:0006753_0.538\|GO:0055086_0.538\|GO:1901137_0.536\|GO:0090407_0.535\|GO:0009117_0.534\|GO:0072521_0.533\|GO:0006163_0.531\|GO:1901293_0.530\|GO:0009165_0.529\|GO:0006164_0.525\|GO:0009123_0.525\|GO:0009124_0.525\|GO:0009126_0.525\|GO:0009127_0.525\|GO:0009150_0.525\|GO:0009152_0.525\|GO:0009156_0.525\|GO:0009161_0.525\|GO:0009167_0.525\|GO:0009168_0.525\|GO:0009259_0.525\|GO:0009260_0.525\|GO:0019693_0.525\|GO:0046390_0.525\|GO:0072522_0.525\|GO:0016020_0.515\|GO:0016829_0.515	IPR000362+148-166_243-270_287-303+\|IPR008948+14-449+\|IPR019468+380-448+\|IPR020557+287-296+\|IPR022761+73-308+	SM00998+380-448+	PF00206+73-308+Lyase	—	PTHR43172+1-463+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	474-475	1.000	1-473	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.576	53779.960	6.947	3.500	29.474	10.105	46.105	53.895	15.789	13.684	43.368

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	1494.489	967.505	1030.527	2031.935	2317.350	1686.744	1722.639	711.486	1414.869	1551.669	1493.040

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.139	0.933	1.088	0.158	-0.443	—	-1.350	1.418	—	—	—	—	—

No JSON data available for plots.

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