Hg_chrom1_TN10mRNA_883
Organism: Heterodera glycines Gene Locus: chr1:11930725-11932167 Feature type: polypeptideProtein Sequence
Length: 340
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 0.821 | 0.481 | 0.101 | 0.931 | 1.81 | 2.031 | 3.824 | 0.196 | 0.517 | 1.337 | 0.519 | 0.408 | 2.206 | 0.54 | 2.143 | 0.241 | 0.267 | 0.0 | 0.173 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_844
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_883
|
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRRKKDKDSNESGEKKHAKKEDKESNKSGKRGPRGPPGRPGKNHEGKEGPPGKPGKPGQPGEPGQHHESKQGPPGKPGQPGKPGQPGKPG
|
— | — | — | — |
1-22
|
0.939
|
1.000
|
0.000
|
0.000
|
0.413
|
0.192
|
0.014
|
0.347
|
0.048
|
0.029
|
0.055
|
0.032
|
0.254
|
0.952
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005763
|
1.000
|
1.000
|
Hsc_gene_4445.t1
|
Hsc_gene_4445.t1
|
— | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008160+96-149_155-208+|IPR050938+31-214+
|
— |
PF01391+96-149_155-208+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR37456+31-214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-340
|
0.000
|
— |
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
34552.310
|
10.338
|
24.000
|
27.353
|
9.706
|
54.412
|
45.588
|
19.118
|
8.235
|
60.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
13845.256
|
3.983
|
20.784
|
71.585
|
28.898
|
3643.412
|
244.421
|
156061.609
|
33.171
|
520.105
|
311.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.154
|
4.032
|
1.895
|
-1.338
|
6.989
|
-3.888
|
5.323
|
-9.178
|
— | — | — | — | — |