Hg_chrom1_TN10mRNA_884
Organism: Heterodera glycines Gene Locus: chr1:11933211-11933764 Feature type: polypeptideProtein Sequence
Length: 102
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.456 | 0.684 | 0.535 | 0.0 | 0.49 | 0.754 | 0.584 | 4.412 | 1.307 | 1.987 | 1.188 | 1.153 | 1.634 | 0.754 | 2.801 | 0.7 | 0.643 | 0.743 | 0.754 | 0.577 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_845
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_884
|
26-Not_Clustered
|
0.534
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RRKSYSLRKGSRLYRHHRRSLHEWRRVHQKIGHKHRRHVK
|
— | — | — | — |
1-37
|
— |
0.881
|
— |
0.000
|
0.751
|
0.192
|
0.004
|
0.213
|
0.025
|
0.024
|
0.053
|
0.014
|
0.070
|
0.388
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005764
|
1.000
|
1.000
|
Hsc_gene_4444.t1
|
Hsc_gene_4444.t1;Hsc_gene_4444.t2
|
— | — |
CAD2157964.1 unnamed protein product [Meloidogyne enterolobii];CAD2188646.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
12251.490
|
12.281
|
20.500
|
36.275
|
17.647
|
50.980
|
49.020
|
30.392
|
5.882
|
32.353
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
273.495
|
79.123
|
26.439
|
15.232
|
89.654
|
470.745
|
44.814
|
154.814
|
9.251
|
859.294
|
494.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.802
|
-2.513
|
-0.693
|
2.525
|
2.408
|
-3.384
|
-1.709
|
-1.646
|
-6.628
|
— | — | — | — |