Hg_chrom1_TN10mRNA_885
Organism: Heterodera glycines Gene Locus: chr1:11939484-11941625 Feature type: polypeptideProtein Sequence
Length: 196
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 1.542 | 0.742 | 2.815 | 1.446 | 0.654 | 0.85 | 1.02 | 0.68 | 0.621 | 1.701 | 1.2 | 1.984 | 0.883 | 0.833 | 0.583 | 0.585 | 0.928 | 0.0 | 1.351 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_846
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_885
|
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.999
|
1.000
|
0.000
|
0.000
|
0.331
|
0.245
|
0.071
|
0.241
|
0.124
|
0.076
|
0.122
|
0.009
|
0.146
|
0.941
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002987
|
2.000
|
1.000
|
Hsc_gene_4443.t1
|
Hsc_gene_4443.t1
|
— |
A0A6P8HC43.1 Actinia tenebrosa protease inhibitors [Actinia tenebrosa]
|
KAI1733250.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.774|GO:0005575_0.732|GO:0110165_0.732|GO:0003674_0.585|GO:0009987_0.551
|
IPR002223+23-80_24-79_25-79_54-64_64-79_138-194_139-194_140-193+|IPR020901+57-75+|IPR036880+14-92_18-82_130-195_137-196+|IPR053014+24-193+
|
SM00131+23-80_138-194+
|
PF00014+24-79_139-194+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+24-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-196
|
4bqd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
22325.620
|
8.053
|
7.000
|
30.102
|
13.776
|
46.939
|
53.061
|
17.347
|
12.755
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
lightyellow
|
1664.268
|
25.085
|
972.779
|
85.137
|
183.733
|
1026.189
|
23.516
|
884.560
|
0.000
|
6080.799
|
3474.742
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.048
|
1.625
|
-3.405
|
1.076
|
2.498
|
-5.439
|
— |
-5.091
|
-11.168
|
7.269
|
-2.700
|
— | — |