SCN Proteipedia

Hg_chrom1_TN10mRNA_886

Organism: Heterodera glycines Gene Locus: chr1:11942933-11950208 Feature type: polypeptide

Protein Sequence

Length: 1,365

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.877	1.141	0.919	0.985	1.026	0.958	0.994	1.245	1.465	1.049	0.888	1.465	1.343	0.803	1.181	0.9	0.829	0.988	0.676	0.776	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_847	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-Not_Clustered	0.849

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	PSEKRKK,RKLKLQECNSRNKFLKR,KRKKPAEIEWKKFTRRIKG,RRCWTECQKLANYDQRKLK	—	—	—	—	—	—	0.000	—	—	0.205	0.224	0.030	0.739	0.167	0.305	0.149	0.391	0.141	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002988	1.000	2.000	Hsc_gene_4442.t1;Hsc_gene_4442.t2	Hsc_gene_4442.t1;Hsc_gene_4442.t2	—	P47990.1 Xanthine dehydrogenase/oxidase [Gallus gallus]	KAI6214043.1 Ferredoxin [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004854\|GO:0005506\|GO:0016491\|GO:0046872\|GO:0050660\|GO:0051536\|GO:0051537\|GO:0071949	GO:0003674_0.836\|GO:0008150_0.816\|GO:0005575_0.718\|GO:0110165_0.718\|GO:0003824_0.682\|GO:0008152_0.642\|GO:0009987_0.586\|GO:0016491_0.556\|GO:0005622_0.517	IPR000674+608-711_608-715+\|IPR001041+17-104_19-92_21-90+\|IPR002346+263-439+\|IPR002888+100-173+\|IPR005107+447-550_447-552+\|IPR006058+56-64+\|IPR008274+757-981+\|IPR012675+14-106+\|IPR014307+19-550+\|IPR016166+256-442+\|IPR016167+248-311+\|IPR016169+312-440+\|IPR016208+12-1364_19-1350+\|IPR036010+18-104+\|IPR036318+222-440+\|IPR036683+443-557+\|IPR036856+574-712+\|IPR036884+112-186+\|IPR037165+721-1348+\|IPR046867+1006-1273+	SM01008+608-715+\|SM01092+447-552+	PF00111+21-90+2Fe-2S_iron-sulfur_cluster_binding_domain\|PF00941+263-439+FAD_binding_domain_in_molybdopterin_dehydrogenase\|PF01315+608-711+Aldehyde_oxidase_and_xanthine_dehydrogenase,_a/b_hammerhead_domain\|PF01799+100-173+[2Fe-2S]_binding_domain\|PF02738+757-981+Molybdopterin_cofactor-binding_domain\|PF03450+447-550+CO_dehydrogenase_flavoprotein_C-terminal_domain\|PF20256+1006-1273+Molybdopterin_cofactor-binding_domain	G3DSA:3.10.20.30:FF:000015+15-105+Aldehyde_oxidase_1\|G3DSA:3.30.365.10:FF:000001+776-867+Xanthine_dehydrogenase_oxidase\|G3DSA:3.30.365.10:FF:000003+868-994+Aldehyde_oxidase_1\|G3DSA:3.30.365.10:FF:000004+1157-1363+Xanthine_dehydrogenase_oxidase\|G3DSA:3.30.43.10:FF:000001+248-311+Xanthine_dehydrogenase/oxidase\|G3DSA:3.30.465.10:FF:000004+312-440+Xanthine_dehydrogenase/oxidase	PTHR11908+19-1350+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1355-1365	1.000	1-1354	3b9j_K	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.767	151373.210	7.814	23.000	25.348	10.842	45.348	54.652	14.139	11.209	50.769

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	purple	1212.792	154.348	3249.819	748.668	1430.722	1513.433	994.729	3831.797	182.057	698.104	476.941

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	4.169	2.141	-2.011	0.902	—	-0.597	1.237	-1.805	—	—	—	—	—

No JSON data available for plots.

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