Hg_chrom1_TN10mRNA_89
Organism: Heterodera glycines Gene Locus: chr1:593559-598118 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.315 | 1.246 | 0.722 | 0.616 | 0.761 | 1.068 | 0.827 | 1.389 | 0.485 | 1.26 | 0.391 | 2.101 | 1.157 | 1.107 | 1.255 | 1.02 | 1.073 | 1.022 | 2.289 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_85
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.121
|
0.548
|
0.128
|
0.449
|
0.344
|
0.601
|
0.418
|
0.035
|
0.286
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005574
|
1.000
|
1.000
|
Hsc_gene_15942.t1
|
Hsc_gene_15942.t1
|
— |
Q8C1A9.1 Protein ABHD18 [Mus musculus]
|
XP_042935574.1 CG32112-PA, putative [Brugia malayi];VIO95280.1 CG32112-PA, putative [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019149+28-100_121-406+|IPR029058+117-451_128-404+
|
— |
PF09752+28-100_121-406+Alpha/beta_hydrolase_domain_containing_18
|
— |
PTHR13617+16-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;456-504
|
1.000
|
2-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
55564.150
|
7.689
|
8.000
|
20.040
|
11.905
|
43.254
|
56.746
|
11.508
|
8.532
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
greenyellow
|
1598.547
|
1565.968
|
1502.387
|
1396.547
|
1707.645
|
2248.533
|
2000.096
|
1901.516
|
511.264
|
1989.185
|
1355.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.289
|
-0.302
|
— |
0.259
|
0.412
|
-0.159
|
-0.349
|
— | — | — | — | — | — |
No JSON data available for plots.