Hg_chrom1_TN10mRNA_890
Organism: Heterodera glycines Gene Locus: chr1:11959731-11960943 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.471 | 0.369 | 1.048 | 0.169 | 2.945 | 2.413 | 0.676 | 0.676 | 0.365 | 0.461 | 0.795 | 0.282 | 4.353 | 0.552 | 0.676 | 0.554 | 0.819 | 0.26 | 0.298 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_851
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.090
|
— | — |
0.048
|
0.093
|
0.009
|
0.100
|
0.455
|
0.217
|
0.265
|
0.004
|
0.639
|
0.359
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005766
|
1.000
|
1.000
|
Hsc_gene_4437.t1
|
Hsc_gene_4437.t1
|
— |
A8XV36.1 Cuticle collagen 144 [Caenorhabditis briggsae]
|
CAB88204.1 putative cuticular collagen [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+8-58_10-58+|IPR008160+149-207_217-274+|IPR050632+14-286+
|
SM01088+8-58+
|
PF01391+149-207_217-274+Collagen_triple_helix_repeat_(20_copies)|PF01484+10-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+14-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-296
|
1.000
|
1-40
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
28892.530
|
8.966
|
10.000
|
10.135
|
3.716
|
31.757
|
68.243
|
7.095
|
3.041
|
70.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
20700.413
|
18.483
|
111.862
|
84789.953
|
39030.323
|
40491.987
|
41493.227
|
6575.786
|
197.794
|
10724.103
|
6212.828
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.368
|
12.024
|
9.673
|
-1.151
|
— | — |
-2.748
|
2.805
|
-5.894
|
8.912
|
— | — | — |
No JSON data available for plots.