Hg_chrom1_TN10mRNA_894
Organism: Heterodera glycines Gene Locus: chr1:11983187-11985623 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.55 | 0.466 | 0.354 | 0.385 | 0.789 | 0.336 | 1.026 | 2.051 | 1.386 | 0.622 | 1.81 | 2.137 | 0.937 | 0.89 | 0.989 | 1.303 | 1.36 | 0.986 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
27-61
|
0.865
|
— | — | — | — |
0.000
|
— | — |
0.202
|
0.066
|
0.034
|
0.155
|
0.178
|
0.211
|
0.210
|
0.034
|
0.675
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005768
|
1.000
|
1.000
|
Hsc_gene_4433.t1
|
Hsc_gene_4433.t1
|
— | — |
KAI3416245.1 hypothetical protein GPALN_005790 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR052860+10-306+
|
— | — | — |
PTHR47521+10-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
361-390
|
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
44366.220
|
10.018
|
18.000
|
15.385
|
14.872
|
40.000
|
60.000
|
10.513
|
4.872
|
48.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
198.880
|
7.878
|
25.022
|
15.808
|
6.604
|
13.104
|
28.089
|
16.826
|
6.512
|
822.718
|
472.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.432
|
0.867
|
-0.551
|
-1.299
|
1.007
|
1.108
|
— |
0.878
|
-7.094
|
— |
-6.689
|
— | — |
No JSON data available for plots.