Hg_chrom1_TN10mRNA_90
Organism: Heterodera glycines Gene Locus: chr1:599279-602668 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.251 | 0.883 | 1.093 | 0.436 | 0.897 | 0.649 | 0.791 | 1.108 | 0.844 | 1.497 | 0.863 | 1.489 | 1.319 | 1.4 | 1.098 | 0.769 | 0.623 | 0.863 | 1.947 | 1.024 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_86
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
3-23
|
0.995
|
— | — | — | — |
0.021
|
— | — |
0.041
|
0.892
|
0.091
|
0.117
|
0.153
|
0.059
|
0.082
|
0.022
|
0.085
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005575
|
1.000
|
1.000
|
Hsc_gene_15941.t1
|
Hsc_gene_15941.t1
|
— |
P08574.3 Cytochrome c1, heme protein, mitochondrial [Homo sapiens]
|
KAF7626041.1 Cytochrome c domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009055|GO:0020037
|
GO:0005575_0.877|GO:0110165_0.876|GO:0016020_0.808|GO:0005622_0.691|GO:0005737_0.670|GO:0043226_0.650|GO:0043229_0.638|GO:0043227_0.634|GO:0043231_0.618
|
IPR002326+14-282_53-72_55-272_73-92_117-137_150-174_189-200_201-220_221-240_240-255+|IPR009056+67-165+|IPR021157+241-282+|IPR036909+45-239_46-239+
|
— |
PF02167+55-272+Cytochrome_C1_family
|
— |
PTHR10266+14-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
295-316
|
1.000
|
1-294
|
8ac5_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
35315.570
|
7.095
|
2.500
|
24.684
|
12.975
|
40.190
|
59.810
|
13.291
|
11.392
|
50.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2161.867
|
840.567
|
1866.210
|
3252.001
|
4337.310
|
3464.417
|
2091.959
|
1405.083
|
1159.480
|
2116.976
|
1706.620
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
1.815
|
0.909
|
0.384
|
-0.309
|
-0.718
|
-1.412
|
0.719
|
— | — | — | — | — |
No JSON data available for plots.