SCN Proteipedia

Hg_chrom1_TN10mRNA_900

Organism: Heterodera glycines Gene Locus: chr1:12007890-12020360 Feature type: polypeptide

Protein Sequence

Length: 2,080

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.989	0.894	0.839	0.962	1.034	1.381	0.584	1.611	1.068	1.559	0.568	1.471	1.175	1.054	1.295	1.188	0.765	0.86	1.036	0.551	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_861	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.759

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	AAAED,RVAKRSR,KRAALAAQKRQLALDRMKK	—	—	—	—	—	—	0.000	—	—	0.555	0.186	0.013	0.512	0.194	0.346	0.347	0.023	0.104	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005773	1.000	1.000	Hsc_gene_4424.t1	Hsc_gene_4424.t1	—	P91133.2 E3 ubiquitin-protein ligase ubr-1 [Caenorhabditis elegans]	KAH7722004.1 Zinc finger in N-recognin family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008270\|GO:0030163\|GO:0061630\|GO:0071596	GO:0008150_0.968\|GO:0003674_0.855\|GO:0009987_0.807\|GO:0008152_0.781\|GO:0065007_0.776\|GO:0050789_0.763\|GO:0044238_0.762\|GO:0005575_0.758\|GO:0050794_0.701\|GO:0110165_0.673\|GO:0048519_0.604\|GO:0048523_0.591\|GO:0043170_0.587\|GO:0005622_0.583\|GO:0019538_0.577\|GO:0003824_0.569\|GO:0016740_0.529\|GO:0140096_0.525\|GO:0005488_0.524\|GO:0009056_0.513\|GO:0016746_0.502\|GO:0009057_0.501	IPR003126+99-169_99-170_101-168+\|IPR003769+234-304+\|IPR014719+218-322_231-303+\|IPR039164+92-2077+\|IPR044046+1552-2053+	SM00396+99-169+	PF02207+101-168+Putative_zinc_finger_in_N-recognin_(UBR_box)\|PF02617+234-304+ATP-dependent_Clp_protease_adaptor_protein_ClpS\|PF18995+1552-2053+Proteolysis_6_C-terminal\|PF22960+855-950+E3_ubiquitin-protein_ligase_UBR1-like,_winged-helix_domain	G3DSA:2.10.110.30:FF:000001+101-170+E3_ubiquitin-protein_ligase_UBR2_isoform_1\|G3DSA:3.30.1390.10:FF:000010+220-321+E3_ubiquitin-protein_ligase_ubr-1	PTHR21497+92-2077+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1115-1162;1369-1468	3.000	1-1114;1163-1368;1469-2080	5tdc_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.661	232852.700	6.978	18.500	24.135	10.673	46.346	53.654	13.317	10.817	48.798

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	4495.816	6694.927	5842.413	5047.478	5450.608	6492.952	5807.345	5122.250	3050.125	2209.860	2569.974

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.425	-0.545	—	—	0.267	-0.151	-0.450	0.325	—	—	—	—	—

No JSON data available for plots.

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