Hg_chrom1_TN10mRNA_902
Organism: Heterodera glycines Gene Locus: chr1:12026720-12028668 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.453 | 0.906 | 0.708 | 0.224 | 1.569 | 1.166 | 0.618 | 0.974 | 2.237 | 1.536 | 1.525 | 1.528 | 0.902 | 0.562 | 1.126 | 0.649 | 0.852 | 0.935 | 1.748 | 0.764 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_863
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
30-51
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.521
|
0.150
|
0.029
|
0.500
|
0.215
|
0.173
|
0.108
|
0.006
|
0.385
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005775
|
1.000
|
1.000
|
Hsc_gene_4420.t1
|
Hsc_gene_4420.t1
|
— |
Q39256.1 Polyubiquitin 8 [Arabidopsis thaliana]
|
KAI3408530.1 Ubiquitin [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.841|GO:0110165_0.841|GO:0005622_0.792|GO:0016020_0.726|GO:0043226_0.694|GO:0043229_0.681|GO:0005737_0.665|GO:0008150_0.652|GO:0043227_0.644|GO:0043231_0.617|GO:0003674_0.575
|
IPR000626+14-59_16-56_69-129_69-144_71-129_152-223_152-225_154-224_233-303+|IPR019956+79-99_100-120+|IPR029071+14-59_70-130_146-225_244-302+|IPR050158+70-129+
|
SM00213+69-144_152-223_233-303+
|
PF00240+16-56_71-129_154-224+Ubiquitin_family
|
— |
PTHR10666+70-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-308
|
5c7m_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
35923.060
|
9.647
|
10.000
|
30.844
|
10.065
|
49.026
|
50.974
|
17.532
|
13.312
|
36.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
137.193
|
1.144
|
111.861
|
35.210
|
4.020
|
4.368
|
1.725
|
5.791
|
712.703
|
4.150
|
307.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.379
|
4.802
|
-1.559
|
-3.143
|
— | — | — |
-1.606
|
6.785
|
-4.162
|
— | — | — |
No JSON data available for plots.