SCN Proteipedia

Hg_chrom1_TN10mRNA_905

Organism: Heterodera glycines Gene Locus: chr1:12037477-12043113 Feature type: polypeptide

Protein Sequence

Length: 747

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.794	1.058	0.949	0.739	1.205	1.098	0.558	1.406	1.428	1.303	0.872	1.811	0.892	0.772	1.366	0.918	0.856	0.974	0.927	1.221	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_866	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	0.979

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	PIWKRKN	—	—	—	—	—	—	0.000	—	—	0.645	0.430	0.034	0.495	0.164	0.123	0.088	0.109	0.069	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005777	1.000	1.000	Hsc_gene_4414.t1	Hsc_gene_4414.t1	—	Q20875.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Caenorhabditis elegans]	KAH7699885.1 DEAD box protein/DEAH protein box helicase [Aphelenchus avenae]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0005524	GO:0005575_0.846\|GO:0110165_0.840\|GO:0008150_0.786\|GO:0005622_0.781\|GO:0016020_0.739\|GO:0009987_0.701\|GO:0043226_0.692\|GO:0043229_0.683\|GO:0043227_0.660\|GO:0043231_0.644\|GO:0008152_0.567\|GO:0044238_0.554\|GO:0003674_0.553\|GO:0044237_0.544\|GO:0005634_0.529\|GO:0009058_0.526\|GO:0043170_0.514\|GO:0044249_0.506	IPR001650+234-423_248-382_276-383+\|IPR002464+156-165+\|IPR007502+443-534+\|IPR011545+46-197+\|IPR011709+598-706+\|IPR014001+35-225_47-214+\|IPR027417+8-218_16-556_219-403+\|IPR048333+444-472+	SM00487+35-225+\|SM00490+276-383+\|SM00847+443-534+	PF00270+46-197+DEAD/DEAH_box_helicase\|PF00271+248-382+Helicase_conserved_C-terminal_domain\|PF04408+444-472+Helicase_associated_domain_(HA2),_winged-helix\|PF07717+598-706+Oligonucleotide/oligosaccharide-binding_(OB)-fold\|PF21010+473-533+Helicase_associated_domain_(HA2),_ratchet-like	G3DSA:3.40.50.300:FF:002125+34-218+ATP-dependent_helicase_HrpB	PTHR18934+33-706+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-747	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.607	85589.190	7.486	10.500	27.711	11.379	48.193	51.807	15.261	12.450	45.515

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	868.301	911.605	652.505	960.361	1284.925	1902.127	808.789	645.248	107.888	1030.815	635.275

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.711	—	0.666	0.388	0.581	-1.224	-1.671	0.471	-3.366	—	—	—	—

No JSON data available for plots.

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