Hg_chrom1_TN10mRNA_908
Organism: Heterodera glycines Gene Locus: chr1:12050187-12052741 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 0.999 | 1.041 | 0.658 | 1.114 | 2.081 | 0.767 | 1.193 | 0.849 | 1.677 | 0.868 | 1.264 | 0.928 | 0.918 | 1.023 | 0.682 | 0.704 | 0.904 | 1.285 | 1.193 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_869
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.482
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.032
|
— | — |
0.074
|
0.044
|
0.002
|
0.250
|
0.297
|
0.712
|
0.553
|
0.004
|
0.555
|
0.371
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005780
|
1.000
|
1.000
|
Hsc_gene_4410.t1
|
Hsc_gene_4410.t1
|
— |
A6H730.1 Prostatic acid phosphatase [Bos taurus]
|
KAH7716893.1 Histidine acid phosphatase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.809|GO:0110165_0.801|GO:0008150_0.755|GO:0009987_0.702|GO:0016020_0.674|GO:0003674_0.634|GO:0005622_0.613|GO:0043226_0.557|GO:0043227_0.540|GO:0043229_0.538|GO:0005737_0.531|GO:0003824_0.509
|
IPR000560+50-351_51-347+|IPR029033+46-398_49-407+|IPR033379+51-65+|IPR050645+25-391+
|
— |
PF00328+51-347+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+25-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
47813.490
|
6.186
|
-2.000
|
25.537
|
11.456
|
47.017
|
52.983
|
13.126
|
12.411
|
44.630
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
6580.385
|
110.481
|
1177.649
|
2583.433
|
1765.811
|
561.368
|
422.550
|
2243.279
|
1451.110
|
24376.639
|
14551.412
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.187
|
4.410
|
1.241
|
-0.580
|
-1.639
|
-0.400
|
1.893
|
-2.266
|
-4.172
|
— |
-3.713
|
— | — |
No JSON data available for plots.