Hg_chrom1_TN10mRNA_911
Organism: Heterodera glycines Gene Locus: chr1:12063957-12065480 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.684 | 0.847 | 0.845 | 1.225 | 1.131 | 0.905 | 1.348 | 0.817 | 1.259 | 1.003 | 1.153 | 1.838 | 1.131 | 1.351 | 0.98 | 0.482 | 0.743 | 1.32 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_872
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
QLQKP,GSGKRQKPDANRLAELAARKREQRARQKKEGHVPQKKI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.918
|
0.072
|
0.016
|
0.211
|
0.043
|
0.024
|
0.059
|
0.008
|
0.070
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000756
|
2.000
|
4.000
|
Hsc_gene_18030.t1;Hsc_gene_18927.t1;Hsc_gene_22774.t1;Hsc_gene_801.t1
|
— | — | — |
CAB9515133.1 specific demethylase 4A [Seminavis robusta]
|
MBL7751783
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0009987_0.849|GO:0003674_0.835|GO:0005575_0.766|GO:0110165_0.764|GO:0071840_0.707|GO:0005622_0.706|GO:0016043_0.695|GO:0016020_0.691|GO:0003824_0.677|GO:0043226_0.671|GO:0065007_0.662|GO:0043229_0.659|GO:0050789_0.645|GO:0006325_0.643|GO:0006338_0.641|GO:0140096_0.636|GO:0043227_0.618|GO:0032451_0.615|GO:0032452_0.615|GO:0140457_0.615|GO:0140993_0.615|GO:0141052_0.615|GO:0043231_0.602|GO:0050794_0.596|GO:0008152_0.555|GO:0005488_0.537|GO:0044237_0.531|GO:0043170_0.528|GO:0005634_0.519|GO:0044238_0.508
|
IPR003347+154-312_192-291+
|
SM00558+154-312+
|
PF02373+192-291+JmjC_domain,_hydroxylase
|
— |
PTHR10694+192-312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
342-408
|
1.000
|
1-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
46261.860
|
8.325
|
10.500
|
27.941
|
13.971
|
45.098
|
54.902
|
15.931
|
12.010
|
46.078
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
642.485
|
4.062
|
8.552
|
3.949
|
6.713
|
7.418
|
4.878
|
6.048
|
4.146
|
2792.155
|
1597.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.006
|
— | — | — | — | — |
-9.578
|
— |
-8.186
|
— | — |
No JSON data available for plots.