Hg_chrom1_TN10mRNA_913
Organism: Heterodera glycines Gene Locus: chr1:12077449-12082837 Feature type: polypeptideProtein Sequence
Length: 750
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.426 | 0.824 | 0.46 | 1.2 | 1.333 | 0.54 | 0.867 | 1.689 | 1.477 | 1.475 | 2.039 | 1.963 | 0.385 | 0.762 | 0.857 | 0.765 | 0.707 | 1.026 | 0.667 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_874
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KRAR
|
— | — | — | — |
1-24
|
0.648
|
0.995
|
1.000
|
0.000
|
0.458
|
0.216
|
0.007
|
0.524
|
0.171
|
0.208
|
0.170
|
0.017
|
0.147
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002983
|
2.000
|
1.000
|
Hsc_gene_4407.t1
|
Hsc_gene_4407.t1
|
— |
Q6PCL9.1 Poly(A) polymerase gamma [Mus musculus]
|
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.754|GO:0110165_0.754|GO:0005622_0.691|GO:0016020_0.670|GO:0043226_0.623|GO:0008150_0.609|GO:0043229_0.609|GO:0043227_0.565|GO:0043231_0.543|GO:0003674_0.526|GO:0009987_0.503
|
IPR007012+463-595+|IPR011068+609-712+|IPR043519+255-395_291-438+
|
— |
PF04928+463-595+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+229-714+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-750
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
86720.790
|
9.200
|
19.500
|
26.933
|
12.400
|
48.933
|
51.067
|
15.200
|
11.733
|
39.733
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
584.129
|
4.591
|
112.617
|
383.611
|
88.896
|
11.507
|
5.882
|
17.907
|
2023.297
|
803.710
|
1326.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.392
|
6.249
|
1.875
|
-2.144
|
-2.935
|
— | — |
-1.466
|
— |
-2.227
|
— | — | — |