Hg_chrom1_TN10mRNA_919
Organism: Heterodera glycines Gene Locus: chr1:12094613-12097156 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.534 | 1.667 | 0.535 | 0.697 | 1.593 | 0.848 | 0.525 | 1.195 | 1.389 | 1.366 | 1.365 | 1.406 | 2.451 | 0.566 | 1.351 | 0.867 | 0.603 | 0.473 | 2.121 | 0.541 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_880
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.596
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|golgi_apparatus
|
— |
KKAMKRQPK,KRSAFACQKKRKKAV,KKGDHQQNNTTKKREN,KKIGNWNIQIIYRKKAMKR
|
1-26
|
0.999
|
46-95
|
0.995
|
— | — |
0.000
|
— | — |
0.104
|
0.172
|
0.003
|
0.220
|
0.301
|
0.162
|
0.714
|
0.088
|
0.243
|
0.659
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002992
|
1.000
|
2.000
|
Hsc_gene_4402.t1;Hsc_gene_4402.t2
|
Hsc_gene_4402.t1;Hsc_gene_4402.t2
|
— | — |
KAI1700208.1 NADH-dependent flavin oxidoreductase nadA [Ditylenchus destructor]
|
WP_239496960
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
64697.630
|
9.637
|
23.500
|
30.515
|
15.809
|
50.735
|
49.265
|
18.015
|
12.500
|
36.949
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
1220.114
|
32.355
|
11.888
|
184.100
|
196.481
|
129.664
|
17.554
|
43.514
|
90.514
|
5039.279
|
2918.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.683
|
2.370
|
4.069
|
— |
-0.584
|
-2.879
|
-1.689
|
-1.167
|
-5.916
|
— |
-4.127
|
— | — |
No JSON data available for plots.