Hg_chrom1_TN10mRNA_923
Organism: Heterodera glycines Gene Locus: chr1:12114217-12115955 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.267 | 1.342 | 0.758 | 0.884 | 1.015 | 1.397 | 0.611 | 0.321 | 0.926 | 1.213 | 1.7 | 2.074 | 1.781 | 0.555 | 0.523 | 1.007 | 0.736 | 0.874 | 0.493 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_884
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
45D07|MT012340.1#tn8jg10445.t1
|
45D07|MT0123401#tn8jg10445t1
|
Hsc_gene_4396;Hsc_gene_4397
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.015
|
— | — |
0.322
|
0.368
|
0.063
|
0.523
|
0.168
|
0.103
|
0.105
|
0.003
|
0.248
|
0.671
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001701
|
2.000
|
2.000
|
Hsc_gene_4396.t1;Hsc_gene_4397.t1
|
— | — | — |
AAM74953.1 chorismate mutase [Heterodera glycines];AZP03082.1 chorismate mutase [Heterodera glycines]
|
MET0342011
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046417
|
GO:0008150_0.934|GO:0009987_0.881|GO:0003674_0.834|GO:0008152_0.747|GO:0044237_0.733|GO:0003824_0.704|GO:0044281_0.694|GO:0006082_0.679|GO:0019752_0.679|GO:0043436_0.679|GO:0043648_0.670|GO:0046417_0.670|GO:0005575_0.651|GO:0110165_0.651|GO:0004106_0.650|GO:0016853_0.650|GO:0016866_0.650
|
IPR002701+119-210_139-209_141-207+|IPR008240+132-246+|IPR036263+139-292+|IPR036979+129-299+|IPR051331+139-218+
|
SM00830+139-209+
|
PF01817+141-207+Chorismate_mutase_type_II
|
— |
PTHR38041+139-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-312
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
34568.070
|
9.508
|
12.000
|
24.679
|
9.295
|
47.436
|
52.564
|
14.423
|
10.256
|
48.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
8459.127
|
222.801
|
5919.410
|
2963.563
|
712.071
|
93.314
|
108.472
|
855.323
|
35184.633
|
6542.098
|
18817.470
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.503
|
3.595
|
-0.890
|
-2.089
|
-2.917
|
— |
3.103
|
-2.840
|
2.316
|
-3.412
|
-3.080
|
— | — |
No JSON data available for plots.