SCN Proteipedia

Hg_chrom1_TN10mRNA_924

Organism: Heterodera glycines Gene Locus: chr1:12117610-12119155 Feature type: polypeptide

Protein Sequence

Length: 217

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.482	1.5	0.251	0.636	0.461	0.354	0.439	0.461	3.175	1.308	0.419	1.084	3.072	0.443	1.129	0.987	1.058	1.815	0.709	1.084	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_885	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.786

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	33-73	0.864	—	—	—	—	0.000	—	—	0.108	0.074	0.015	0.051	0.425	0.207	0.172	0.015	0.828	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005786	1.000	1.000	Hsc_gene_4392.t1	—	—	Q89609.1 G-protein coupled receptor E1 [Equid herpesvirus type 2 strain 86/87]	KAF7633661.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.936\|GO:0009987_0.887\|GO:0003674_0.829\|GO:0050896_0.773\|GO:0065007_0.756\|GO:0051716_0.745\|GO:0050789_0.738\|GO:0042221_0.722\|GO:0032501_0.721\|GO:0050794_0.719\|GO:0042592_0.706\|GO:0009605_0.694\|GO:0032502_0.694\|GO:0048856_0.694\|GO:0070887_0.693\|GO:0005488_0.688\|GO:0048518_0.688\|GO:0048522_0.683\|GO:0030154_0.680\|GO:0048468_0.680\|GO:0048869_0.680\|GO:0051239_0.680\|GO:0002376_0.679\|GO:0040011_0.676\|GO:0001775_0.675\|GO:0008283_0.675\|GO:0045321_0.675\|GO:0048870_0.675\|GO:0048871_0.675\|GO:0051240_0.675\|GO:0002682_0.674\|GO:0002684_0.674\|GO:0006935_0.674\|GO:0006955_0.674\|GO:0042330_0.674\|GO:0042127_0.673\|GO:0001776_0.670\|GO:0002250_0.670\|GO:0002252_0.670\|GO:0002263_0.670\|GO:0002285_0.670\|GO:0002286_0.670\|GO:0002287_0.670\|GO:0002292_0.670\|GO:0002293_0.670\|GO:0002294_0.670\|GO:0002312_0.670\|GO:0002313_0.670\|GO:0002335_0.670\|GO:0002366_0.670\|GO:0002407_0.670\|GO:0002521_0.670\|GO:0002573_0.670\|GO:0002694_0.670\|GO:0002696_0.670\|GO:0006959_0.670\|GO:0008284_0.670\|GO:0010818_0.670\|GO:0016477_0.670\|GO:0030097_0.670\|GO:0030098_0.670\|GO:0030099_0.670\|GO:0030183_0.670\|GO:0030217_0.670\|GO:0030316_0.670\|GO:0030595_0.670\|GO:0030888_0.670\|GO:0030890_0.670\|GO:0032943_0.670\|GO:0032944_0.670\|GO:0032946_0.670\|GO:0035710_0.670\|GO:0036145_0.670\|GO:0036336_0.670\|GO:0042093_0.670\|GO:0042100_0.670\|GO:0042110_0.670\|GO:0042113_0.670\|GO:0043367_0.670\|GO:0046631_0.670\|GO:0046632_0.670\|GO:0046649_0.670\|GO:0046651_0.670\|GO:0048247_0.670\|GO:0048872_0.670\|GO:0050670_0.670\|GO:0050671_0.670\|GO:0050864_0.670\|GO:0050865_0.670\|GO:0050867_0.670\|GO:0050871_0.670\|GO:0050900_0.670\|GO:0051249_0.670\|GO:0051251_0.670\|GO:0060326_0.670\|GO:0061470_0.670\|GO:0070661_0.670\|GO:0070663_0.670\|GO:0070665_0.670\|GO:0071674_0.670\|GO:0072676_0.670\|GO:0072678_0.670\|GO:1903131_0.670\|GO:0008289_0.661\|GO:0097159_0.656\|GO:0005496_0.650\|GO:0008142_0.650\|GO:0032934_0.650	IPR000276+16-40_31-148_49-70_90-112_96-112_146-169+\|IPR017452+31-217+	—	PF00001+31-148+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24243+17-210+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-217	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.718	24949.880	9.958	10.000	13.364	16.590	34.562	65.438	9.217	4.147	45.161

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	55.205	42.868	229.901	38.341	27.063	91.640	7.704	140.196	16.231	12.706	14.217

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.196	—	-2.475	—	1.779	-3.562	—	-4.046	—	—	—	—	—

No JSON data available for plots.

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