SCN Proteipedia

Hg_chrom1_TN10mRNA_926

Organism: Heterodera glycines Gene Locus: chr1:12120576-12124824 Feature type: polypeptide

Protein Sequence

Length: 425

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.012	1.04	0.898	0.487	1.647	0.905	0.616	0.471	0.523	0.731	1.497	0.969	0.98	1.267	1.441	1.21	1.273	0.713	1.629	0.415	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_886	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.774

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRYLSQIPKFARKKGP,KKRPKLEAKKRGRTTNK	—	—	—	—	—	—	0.000	—	—	0.734	0.147	0.009	0.586	0.051	0.078	0.072	0.003	0.037	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002994	2.000	1.000	Hsc_gene_4391.t2	Hsc_gene_4391.t1;Hsc_gene_4391.t2	—	Q09599.1 Histone RNA hairpin-binding protein [Caenorhabditis elegans]	KAI1712426.1 histone RNA hairpin-binding protein RNA-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0003729	GO:0005575_0.939\|GO:0110165_0.932\|GO:0008150_0.925\|GO:0009987_0.882\|GO:0005622_0.879\|GO:0003674_0.848\|GO:0016020_0.844\|GO:0043226_0.838\|GO:0005488_0.831\|GO:0043229_0.822\|GO:0043227_0.771\|GO:0043231_0.753\|GO:0003676_0.739\|GO:0097159_0.739\|GO:0003723_0.709\|GO:0005634_0.704\|GO:0003729_0.659\|GO:0005737_0.538\|GO:0008152_0.518\|GO:0043170_0.518\|GO:0009058_0.516\|GO:0009059_0.513\|GO:0010467_0.513\|GO:0044237_0.513\|GO:0044249_0.513\|GO:0044238_0.509	IPR026502+38-362+\|IPR029344+189-257+\|IPR038294+187-257+	—	PF15247+189-257+Histone_RNA_hairpin-binding_protein_RNA-binding_domain	—	PTHR17408+38-362+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	73-425	1.000	1-72	4qoz_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.869	47757.490	9.408	11.000	32.706	8.000	56.941	43.059	17.882	14.824	52.235

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	magenta	591.398	402.321	639.611	634.964	951.113	651.881	1114.707	259.662	21.052	826.230	481.153

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.440	0.521	—	0.551	-0.530	0.785	-1.436	2.246	-5.412	5.128	—	—	—

No JSON data available for plots.

Back to Browser