Hg_chrom1_TN10mRNA_927
Organism: Heterodera glycines Gene Locus: chr1:12125137-12129370 Feature type: polypeptideProtein Sequence
Length: 656
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.17 | 0.922 | 0.942 | 0.736 | 1.651 | 0.743 | 0.907 | 1.22 | 0.576 | 1.154 | 1.409 | 0.986 | 1.228 | 0.586 | 1.431 | 0.74 | 1.0 | 0.901 | 0.704 | 0.314 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_887
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRPK,RNEKRKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.835
|
0.083
|
0.019
|
0.215
|
0.029
|
0.015
|
0.028
|
0.010
|
0.023
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005787
|
1.000
|
1.000
|
Hsc_gene_4390.t1
|
Hsc_gene_4390.t1
|
— |
Q9Y4C8.3 Probable RNA-binding protein 19 [Homo sapiens]
|
KAI1723587.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.831|GO:0110165_0.825|GO:0005622_0.740|GO:0016020_0.735|GO:0043226_0.702|GO:0008150_0.689|GO:0043229_0.666|GO:0043227_0.625|GO:0043231_0.598|GO:0003674_0.575|GO:0005634_0.524|GO:0009987_0.521|GO:0005488_0.515
|
IPR000504+36-117_37-113_39-110_172-249_173-245_174-242_391-470_392-466_393-449_543-622_544-618_545-615+|IPR012677+2-121_122-258_382-489_490-636+|IPR035979+28-117_172-470_537-634+|IPR051945+167-449+
|
SM00360+37-113_173-245_392-466_544-618+
|
PF00076+39-110_174-242_393-449_545-615+RNA_recognition_motif
|
— |
PTHR48039+167-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-44;483-550;656-656
|
2.000
|
45-482;551-655
|
2cph_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
72954.710
|
8.476
|
16.000
|
33.841
|
8.841
|
51.982
|
48.018
|
18.750
|
15.091
|
49.238
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2062.543
|
2035.966
|
1946.646
|
2143.320
|
1951.014
|
1441.319
|
1666.174
|
986.316
|
3584.677
|
1771.086
|
2548.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.295
|
— |
0.248
|
-0.168
|
-0.422
|
0.220
|
-0.652
|
0.899
|
— | — | — | — | — |
No JSON data available for plots.