Hg_chrom1_TN10mRNA_928
Organism: Heterodera glycines Gene Locus: chr1:12130417-12131585 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.545 | 0.848 | 1.42 | 1.078 | 1.476 | 0.267 | 0.682 | 1.302 | 0.926 | 0.704 | 1.657 | 1.838 | 0.579 | 1.002 | 1.701 | 0.967 | 1.11 | 0.631 | 2.404 | 0.766 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_888
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRYLSEIPKYLRKKGV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.712
|
0.158
|
0.013
|
0.550
|
0.039
|
0.080
|
0.071
|
0.004
|
0.081
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005788
|
1.000
|
1.000
|
Hsc_gene_4389.t1
|
Hsc_gene_4389.t1
|
— |
Q09599.1 Histone RNA hairpin-binding protein [Caenorhabditis elegans]
|
CDJ80152.1 Slbp protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003729
|
GO:0008150_0.927|GO:0005575_0.898|GO:0110165_0.895|GO:0003674_0.853|GO:0009987_0.853|GO:0005622_0.842|GO:0005488_0.812|GO:0043226_0.795|GO:0016020_0.787|GO:0043229_0.786|GO:0043227_0.742|GO:0043231_0.731|GO:0097159_0.713|GO:0003676_0.703|GO:0005634_0.691|GO:0003723_0.686|GO:0003729_0.656|GO:0008152_0.569|GO:0043170_0.569|GO:0005737_0.567|GO:0044238_0.565|GO:0009058_0.554|GO:0009059_0.550|GO:0044237_0.550|GO:0044249_0.550|GO:0010467_0.546
|
IPR026502+10-88+|IPR029344+16-84+|IPR038294+14-84+
|
— |
PF15247+16-84+Histone_RNA_hairpin-binding_protein_RNA-binding_domain
|
— |
PTHR17408+10-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
4qoz_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
22313.270
|
8.712
|
7.500
|
38.542
|
10.417
|
56.771
|
43.229
|
21.875
|
16.667
|
47.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
299.530
|
94.193
|
117.825
|
157.909
|
243.376
|
199.834
|
448.377
|
125.874
|
104.898
|
711.498
|
451.527
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.608
|
0.534
|
0.593
|
-0.271
|
1.178
|
-0.780
|
1.980
|
— | — | — |
6.366
|
— |
No JSON data available for plots.