Hg_chrom1_TN10mRNA_931
Organism: Heterodera glycines Gene Locus: chr1:12145688-12146463 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 1.571 | 0.983 | 0.699 | 1.126 | 0.347 | 0.402 | 0.676 | 1.802 | 0.913 | 1.126 | 1.192 | 0.751 | 1.689 | 1.103 | 1.158 | 1.108 | 0.614 | 1.04 | 1.192 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_891
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.460
|
0.188
|
0.016
|
0.642
|
0.136
|
0.058
|
0.134
|
0.046
|
0.083
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005790
|
1.000
|
1.000
|
Hsc_gene_4385.t1
|
Hsc_gene_4378.t1;Hsc_gene_4385.t1
|
— |
P25867.1 Ubiquitin-conjugating enzyme E2-17 kDa [Drosophila melanogaster]
|
XP_058476861.1 ubiquitin-conjugating enzyme E2 D1b [Solea solea]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.862|GO:0003674_0.761|GO:0008152_0.703|GO:0044238_0.691|GO:0043170_0.686|GO:0003824_0.649|GO:0019538_0.640|GO:0016740_0.619|GO:0140096_0.617|GO:0016746_0.611|GO:0016755_0.607|GO:0019787_0.607|GO:0004842_0.605|GO:0005575_0.509
|
IPR000608+1-148_4-143_5-142+|IPR016135+1-148_2-147+|IPR023313+75-90+|IPR050113+2-147+
|
SM00212+4-148+
|
PF00179+5-142+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000060+1-148+Ubiquitin_conjugating_enzyme_(UbcB)
|
PTHR24067+2-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-148
|
1z2u_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
16673.990
|
7.739
|
2.000
|
26.351
|
9.459
|
49.324
|
50.676
|
14.189
|
12.162
|
52.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
832.952
|
15.036
|
14.530
|
37.979
|
188.439
|
2827.251
|
134.456
|
2522.472
|
0.000
|
1491.604
|
852.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.198
|
1.496
|
2.278
|
3.922
|
-4.383
|
— |
-4.081
|
-26.305
|
6.104
|
— | — | — |
No JSON data available for plots.