Hg_chrom1_TN10mRNA_935
Organism: Heterodera glycines Gene Locus: chr1:12168946-12170113 Feature type: polypeptideProtein Sequence
Length: 145
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 0.962 | 1.003 | 0.476 | 2.299 | 0.531 | 0.739 | 1.724 | 1.533 | 1.118 | 0.731 | 2.028 | 0.766 | 0.796 | 1.548 | 0.197 | 1.018 | 1.149 | 0.0 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_895
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.696
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.846
|
0.130
|
0.016
|
0.534
|
0.049
|
0.114
|
0.046
|
0.004
|
0.029
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005792
|
1.000
|
1.000
|
Hsc_gene_4380.t1
|
Hsc_gene_4380.t1
|
— |
Q61IX2.1 Probable DNA-directed RNA polymerases I and III subunit RPAC2 [Caenorhabditis briggsae]
|
KAF7635801.1 RNA_pol_L_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351|GO:0046983
|
GO:0005575_0.835|GO:0110165_0.717|GO:0005622_0.684|GO:0032991_0.635|GO:0016020_0.625|GO:0043226_0.611|GO:0043229_0.588|GO:0008150_0.577|GO:0043227_0.557|GO:0043231_0.543|GO:1902494_0.537|GO:0140535_0.521|GO:0009987_0.517|GO:0061695_0.506|GO:1990234_0.506|GO:0000428_0.504|GO:0030880_0.504
|
IPR008193+44-75+|IPR009025+41-112+|IPR022905+32-114+|IPR033898+30-114+|IPR036603+14-124_24-119+
|
— |
PF13656+41-112+RNA_polymerase_Rpb3/Rpb11_dimerisation_domain
|
— |
PTHR13946+22-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;123-145
|
1.000
|
15-122
|
7aoe_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
16536.790
|
4.710
|
-7.500
|
35.172
|
8.966
|
48.966
|
51.034
|
15.862
|
19.310
|
44.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
896.877
|
311.257
|
393.714
|
720.975
|
671.230
|
455.764
|
987.863
|
2300.373
|
886.706
|
1068.367
|
990.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.075
|
0.983
|
-0.135
|
-0.544
|
1.127
|
2.226
|
-1.074
|
— | — | — | — | — |
No JSON data available for plots.