Hg_chrom1_TN10mRNA_936
Organism: Heterodera glycines Gene Locus: chr1:12170301-12172094 Feature type: polypeptideProtein Sequence
Length: 266
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.874 | 2.051 | 0.778 | 1.19 | 0.482 | 0.492 | 0.376 | 1.337 | 1.168 | 1.31 | 2.433 | 1.671 | 0.361 | 0.767 | 1.182 | 1.171 | 1.082 | 0.0 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_896
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.874
|
0.174
|
0.017
|
0.495
|
0.052
|
0.123
|
0.034
|
0.001
|
0.050
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002996
|
2.000
|
1.000
|
Hsc_gene_4379.t1
|
Hsc_gene_4379.t1
|
— |
O02115.3 Proliferating cell nuclear antigen [Caenorhabditis elegans]
|
KAI1701744.1 repair protein rad1/Rec1/Rad17 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006275|GO:0030337
|
GO:0005575_0.780|GO:0110165_0.777|GO:0008150_0.763|GO:0005622_0.720|GO:0016020_0.688|GO:0009987_0.666|GO:0043226_0.659|GO:0043229_0.653|GO:0043227_0.632|GO:0043231_0.621|GO:0003674_0.575|GO:0050896_0.564|GO:0005488_0.521|GO:0005634_0.511
|
IPR000730+1-260_1-262_2-257_10-29_34-52_56-80_110-132_205-219_243-260+|IPR022648+1-124+|IPR022649+127-256+|IPR022659+34-57+|IPR046938+1-126_127-260+
|
— |
PF00705+1-124+Proliferating_cell_nuclear_antigen,_N-terminal_domain|PF02747+127-256+Proliferating_cell_nuclear_antigen,_C-terminal_domain
|
G3DSA:3.10.150.10:FF:000006+164-261+Proliferating_cell_nuclear_antigen
|
PTHR11352+1-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-266
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
29871.990
|
4.386
|
-15.000
|
31.579
|
8.271
|
52.632
|
47.368
|
13.158
|
18.421
|
51.504
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.