SCN Proteipedia

Hg_chrom1_TN10mRNA_939

Organism: Heterodera glycines Gene Locus: chr1:12175551-12181380 Feature type: polypeptide

Protein Sequence

Length: 863

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.159	0.862	1.053	0.639	1.275	1.248	0.883	1.101	0.978	1.3	0.685	1.84	0.998	0.735	1.561	1.059	0.741	0.825	0.446	0.545	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_898	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	28-51	0.974	5-45	0.976	—	—	0.000	—	—	0.134	0.922	0.021	0.310	0.030	0.035	0.090	0.023	0.038	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001069	4.000	1.000	Hsc_gene_4382.t1	Hsc_gene_4382.t1	—	Q8TCS8.2 Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Homo sapiens]	KAF7635192.1 S1 motif domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0004654\|GO:0006396\|GO:0006402	GO:0005575_0.909\|GO:0110165_0.909\|GO:0005622_0.820\|GO:0008150_0.808\|GO:0016020_0.735\|GO:0005737_0.732\|GO:0009987_0.671\|GO:0003674_0.598\|GO:0043226_0.557\|GO:0008152_0.552\|GO:0043229_0.548\|GO:0044238_0.541\|GO:0044237_0.535\|GO:0009058_0.528\|GO:0043170_0.527\|GO:0065007_0.512\|GO:0043227_0.511\|GO:0044249_0.509	IPR001247+185-275_461-597+\|IPR012162+181-846+\|IPR015847+280-358+\|IPR015848+399-457+\|IPR020568+187-275_429-632+\|IPR027408+167-385_393-695+\|IPR036345+280-383_591-694+\|IPR036612+696-763_703-774+	—	PF01138+185-275_461-597+3'_exoribonuclease_family,_domain_1\|PF03725+280-358+3'_exoribonuclease_family,_domain_2\|PF03726+399-457+Polyribonucleotide_nucleotidyltransferase,_RNA_binding_domain	—	PTHR11252+181-846+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	89-192	2.000	1-88;193-863	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.616	95373.080	6.390	-1.500	27.810	8.227	48.320	51.680	14.368	13.441	49.942

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightgreen	435.229	681.064	427.497	547.469	608.561	387.497	655.100	267.370	523.169	171.292	322.097

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.901	-0.452	0.465	—	-0.636	0.768	-0.642	1.437	—	—	—	—	—

No JSON data available for plots.

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