Hg_chrom1_TN10mRNA_94
Organism: Heterodera glycines Gene Locus: chr1:620529-631252 Feature type: polypeptideProtein Sequence
Length: 1,127
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.465 | 0.903 | 1.53 | 1.154 | 0.91 | 0.613 | 1.42 | 1.479 | 1.019 | 1.25 | 1.305 | 1.306 | 0.99 | 0.869 | 0.887 | 0.931 | 0.699 | 0.819 | 0.966 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_90
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.915
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRKR,RRRK
|
— | — | — | — |
1-19
|
0.998
|
1.000
|
0.000
|
0.000
|
0.272
|
0.126
|
0.045
|
0.242
|
0.175
|
0.175
|
0.168
|
0.061
|
0.337
|
0.572
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000276
|
7.000
|
2.000
|
Hsc_gene_1689.t1;Hsc_gene_22556.t1
|
Hsc_gene_1509.t1
|
— |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.810|GO:0032501_0.659|GO:0005575_0.579|GO:0110165_0.579|GO:0032502_0.504|GO:0048856_0.504
|
IPR000742+812-823+|IPR001506+582-788_607-788_685-703_704-721_735-750_774-787+|IPR006026+584-740+|IPR024079+544-790+
|
SM00235+584-740+
|
PF01400+607-788+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+554-871+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
127819.370
|
7.765
|
23.000
|
27.240
|
11.890
|
48.980
|
51.020
|
15.350
|
11.890
|
48.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
376.975
|
5.448
|
7.482
|
2.188
|
5.708
|
62.233
|
29.843
|
149.549
|
2.233
|
1549.170
|
886.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.452
|
-1.664
|
1.356
|
3.452
|
-1.048
|
1.155
|
-2.178
|
-9.542
|
— |
-7.788
|
— | — |