Hg_chrom1_TN10mRNA_941
Organism: Heterodera glycines Gene Locus: chr1:12206128-12206608 Feature type: polypeptideProtein Sequence
Length: 102
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.684 | 0.713 | 1.352 | 1.307 | 0.251 | 0.817 | 1.471 | 1.089 | 2.12 | 1.188 | 2.884 | 1.362 | 0.189 | 1.0 | 1.401 | 0.482 | 0.743 | 0.754 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_900
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RNLKRKM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.750
|
0.129
|
0.052
|
0.459
|
0.061
|
0.070
|
0.119
|
0.001
|
0.053
|
0.446
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002996
|
2.000
|
1.000
|
Hsc_gene_4379.t1
|
Hsc_gene_4379.t1
|
— |
O02115.3 Proliferating cell nuclear antigen [Caenorhabditis elegans]
|
AVV64048.1 proliferating cell nuclear antigen [Anisakis simplex]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006275|GO:0030337
|
GO:0005575_0.800|GO:0110165_0.790|GO:0008150_0.766|GO:0005622_0.699|GO:0016020_0.690|GO:0009987_0.671|GO:0043226_0.651|GO:0043229_0.621|GO:0043227_0.605|GO:0043231_0.596|GO:0050896_0.592|GO:0065007_0.533|GO:0003674_0.530|GO:0050789_0.517|GO:0051716_0.516|GO:0005488_0.515
|
IPR000730+10-87_10-88_19-38_43-61_65-89+|IPR022648+10-87+|IPR022659+43-66+|IPR046938+10-88+
|
— |
PF00705+10-87+Proliferating_cell_nuclear_antigen,_N-terminal_domain
|
— |
PTHR11352+10-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-102
|
6qh1_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
11301.320
|
7.707
|
2.500
|
27.451
|
8.824
|
44.118
|
55.882
|
15.686
|
11.765
|
44.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
48.092
|
20.492
|
59.738
|
48.165
|
50.689
|
51.056
|
71.303
|
59.491
|
29.327
|
53.056
|
42.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.314
|
1.097
|
— | — | — |
0.492
|
— |
0.405
|
— | — | — | — | — |
No JSON data available for plots.