Hg_chrom1_TN10mRNA_942
Organism: Heterodera glycines Gene Locus: chr1:12208461-12209242 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.646 | 0.926 | 0.644 | 0.763 | 0.295 | 0.794 | 0.895 | 1.549 | 0.983 | 1.196 | 0.469 | 1.822 | 0.983 | 1.276 | 1.716 | 0.759 | 1.088 | 1.207 | 1.021 | 0.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_901
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.637
|
0.473
|
0.065
|
0.416
|
0.242
|
0.109
|
0.077
|
0.018
|
0.242
|
0.390
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005793
|
1.000
|
1.000
|
Hsc_gene_9062.t1
|
Hsc_gene_9062.t1
|
— |
B8EMF2.1 Lon protease [Methylocella silvestris BL2]
|
WP_090663913.1 endopeptidase La [Belnapia rosea];SDD55101.1 ATP-dependent Lon protease [Belnapia rosea]
|
HTJ59355
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0030163
|
GO:0005575_0.856|GO:0110165_0.849|GO:0016020_0.770|GO:0005622_0.735|GO:0005737_0.705|GO:0043226_0.703|GO:0043229_0.694|GO:0008150_0.692|GO:0043227_0.669|GO:0043231_0.669
|
IPR008269+120-219+|IPR014721+45-225+|IPR020568+88-221+|IPR027065+120-222+
|
— |
PF05362+120-219+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— |
PTHR10046+120-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
24305.260
|
11.082
|
17.500
|
19.912
|
9.292
|
38.938
|
61.062
|
14.602
|
5.310
|
57.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
102.970
|
25.494
|
137.288
|
72.857
|
39.085
|
74.147
|
41.830
|
129.966
|
63.456
|
207.650
|
145.853
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.198
|
1.377
|
-0.805
|
-0.929
|
0.938
|
-0.815
|
0.706
|
-1.493
|
— | — | — | — | — |
No JSON data available for plots.