SCN Proteipedia

Hg_chrom1_TN10mRNA_944

Organism: Heterodera glycines Gene Locus: chr1:12262363-12263876 Feature type: polypeptide

Protein Sequence

Length: 227

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.615	1.229	1.442	1.519	1.175	0.791	0.944	1.762	0.783	0.417	0.801	2.591	1.713	0.762	1.349	1.196	0.794	0.4	2.372	1.037	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_903	—	—	1.556	1.000	2.000	1.000	2.000	3.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	—	—	—	—	—	—	—	0.000	—	—	0.288	0.190	0.078	0.187	0.170	0.088	0.149	0.019	0.235	0.905

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001703	1.000	3.000	Hsc_gene_11464.t1;Hsc_gene_4285.t1;Hsc_gene_4377.t1	Hsc_gene_4285.t1;Hsc_gene_4377.t1	—	P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]	KAF7637878.1 Tyrosinase_Cu-bd domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016491	GO:0008150_0.932\|GO:0003674_0.881\|GO:0005575_0.879\|GO:0110165_0.868\|GO:0009987_0.855\|GO:0008152_0.814\|GO:0005488_0.811\|GO:0005622_0.789\|GO:0009058_0.774\|GO:0005515_0.752\|GO:0043226_0.741\|GO:0016020_0.729\|GO:0005737_0.725\|GO:0043229_0.724\|GO:0043227_0.718\|GO:0043231_0.701\|GO:1901615_0.680\|GO:1901617_0.675\|GO:0019748_0.674\|GO:0044550_0.674\|GO:0006582_0.670\|GO:0018958_0.670\|GO:0042438_0.670\|GO:0042440_0.670\|GO:0046148_0.670\|GO:0046189_0.670\|GO:0042802_0.668\|GO:0031982_0.569\|GO:0044238_0.561\|GO:0032501_0.558\|GO:0031410_0.552\|GO:0097708_0.552\|GO:0044237_0.551\|GO:0042470_0.540\|GO:0048770_0.540\|GO:0003824_0.523	IPR002227+23-34_23-63_43-61_44-55+\|IPR008922+2-124_16-120+\|IPR050316+14-154+	—	PF00264+23-63+Common_central_domain_of_tyrosinase	—	PTHR11474+14-154+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	186-227	1.000	1-185	3j32_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.606	26225.090	5.844	-3.000	30.396	16.300	51.982	48.018	15.419	14.978	50.661

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	purple	1369.113	381.385	2343.728	1392.638	1759.821	2241.711	1155.236	4572.975	83.689	734.292	455.462

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.392	1.731	-0.644	0.305	0.364	-0.946	0.933	-1.845	-3.247	4.236	—	—	—

No JSON data available for plots.

Back to Browser