SCN Proteipedia

Hg_chrom1_TN10mRNA_945

Organism: Heterodera glycines Gene Locus: chr1:12264737-12271584 Feature type: polypeptide

Protein Sequence

Length: 1,160

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.752	0.762	1.223	0.446	1.466	1.282	0.739	0.905	0.996	1.037	0.967	1.826	1.03	0.796	1.795	0.825	1.032	0.94	0.862	0.811	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_904	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.810

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRNERGRRHQRRHRY,KRGDAAAAAEEEKLFKK,KKPSLLGLDRLAKAKRE,ERERRNERGRRHQRRHR,KRRDRGDREERRTRDRKS	—	—	—	—	—	—	0.000	—	—	0.830	0.146	0.017	0.383	0.051	0.032	0.047	0.072	0.086	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005795	1.000	1.000	Hsc_gene_4376.t1	Hsc_gene_4376.t1	—	P34498.2 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 [Caenorhabditis elegans]	KAH7731775.1 putative PRP16-RNA-dependent ATPase [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0005524	GO:0005575_0.875\|GO:0110165_0.869\|GO:0005622_0.813\|GO:0008150_0.808\|GO:0016020_0.788\|GO:0043226_0.754\|GO:0009987_0.741\|GO:0043229_0.728\|GO:0043227_0.680\|GO:0043231_0.645\|GO:0003674_0.568\|GO:0005634_0.568\|GO:0008152_0.565\|GO:0044238_0.564\|GO:0009058_0.549\|GO:0044237_0.549\|GO:0043170_0.547\|GO:0044249_0.535\|GO:0009059_0.529\|GO:0006139_0.515\|GO:0010467_0.512\|GO:0090304_0.503	IPR001650+656-839_674-798_691-798+\|IPR002464+583-592+\|IPR007502+859-949+\|IPR011545+474-626+\|IPR011709+1006-1083+\|IPR014001+465-651_477-641+\|IPR027417+417-644_455-1061_645-818+\|IPR048333+863-888+	SM00487+465-651+\|SM00490+691-798+\|SM00847+859-949+	PF00270+474-626+DEAD/DEAH_box_helicase\|PF00271+674-798+Helicase_conserved_C-terminal_domain\|PF04408+863-888+Helicase_associated_domain_(HA2),_winged-helix\|PF07717+1006-1083+Oligonucleotide/oligosaccharide-binding_(OB)-fold\|PF21010+889-948+Helicase_associated_domain_(HA2),_ratchet-like	G3DSA:1.20.120.1080:FF:000001+843-944+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase\|G3DSA:3.40.50.300:FF:000007+645-819+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase\|G3DSA:3.40.50.300:FF:000615+420-644+pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DEAH7	PTHR18934+425-1111+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-319;1100-1160	1.000	320-1099	8cnt_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.571	132877.400	7.047	6.500	32.500	9.397	52.845	47.155	16.983	15.517	46.379

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	2113.263	2374.471	1523.998	1646.410	1933.457	1658.623	2655.445	922.216	1208.079	3571.485	2558.597

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.870	-0.665	0.221	0.200	-0.207	0.690	-0.953	1.669	—	—	—	—	—

No JSON data available for plots.

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