Hg_chrom1_TN10mRNA_95
Organism: Heterodera glycines Gene Locus: chr1:633574-638060 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.552 | 1.518 | 1.079 | 1.842 | 1.335 | 1.065 | 0.777 | 2.077 | 1.319 | 1.002 | 0.944 | 1.571 | 0.989 | 0.514 | 1.514 | 0.848 | 0.535 | 0.584 | 0.913 | 1.309 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_91
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRKR,RRRK
|
26-56
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.218
|
0.184
|
0.018
|
0.244
|
0.202
|
0.040
|
0.144
|
0.004
|
0.084
|
0.828
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000276
|
7.000
|
2.000
|
Hsc_gene_1689.t1;Hsc_gene_22556.t1
|
Hsc_gene_15938.t1;Hsc_gene_15938.t2;Hsc_gene_22558.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.768|GO:0032501_0.572|GO:0005575_0.560|GO:0110165_0.550
|
IPR000742+269-280+|IPR001506+34-245_64-245_70-88_142-160_161-178_192-207_231-244+|IPR006026+41-197+|IPR024079+3-247+
|
SM00235+41-197+
|
PF01400+64-245+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+17-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
39123.250
|
7.221
|
6.000
|
31.751
|
13.353
|
51.632
|
48.368
|
17.804
|
13.947
|
44.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
117.417
|
7.282
|
5.323
|
3.059
|
3.425
|
25.993
|
7.398
|
66.103
|
2.747
|
467.171
|
268.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.390
|
— | — |
2.931
|
-1.806
|
1.237
|
-3.017
|
-7.539
|
— |
-6.843
|
— | — |
No JSON data available for plots.