SCN Proteipedia

Hg_chrom1_TN10mRNA_952

Organism: Heterodera glycines Gene Locus: chr1:12300216-12302251 Feature type: polypeptide

Protein Sequence

Length: 334

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.149	1.253	0.327	0.413	1.747	1.996	0.713	2.395	0.333	0.647	0.68	1.585	1.58	1.555	0.917	1.198	0.883	0.454	1.152	0.793	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_911	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.607	0.178	0.021	0.439	0.053	0.054	0.091	0.010	0.111	0.149

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005798	1.000	1.000	Hsc_gene_4371.t1	Hsc_gene_4371.t1	—	Q9I9A2.1 Retinal homeobox protein Rx2 [Oryzias latipes]	CAA07775.1 Rx2 protein, partial [Oryzias latipes]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.912\|GO:0009987_0.829\|GO:0032501_0.796\|GO:0032502_0.760\|GO:0048856_0.760\|GO:0007275_0.712\|GO:0048513_0.677\|GO:0005575_0.675\|GO:0048731_0.675\|GO:0065007_0.668\|GO:0050789_0.664\|GO:0050794_0.655\|GO:0110165_0.639\|GO:0005622_0.637\|GO:0043226_0.631\|GO:0003674_0.630\|GO:0005488_0.630\|GO:0043229_0.616\|GO:0003676_0.609\|GO:0097159_0.609\|GO:0008152_0.598\|GO:0019222_0.598\|GO:0031323_0.598\|GO:0044237_0.598\|GO:0044238_0.591\|GO:0080090_0.591\|GO:0009058_0.589\|GO:0009059_0.589\|GO:0010467_0.589\|GO:0043170_0.589\|GO:0044249_0.589\|GO:0060255_0.589\|GO:0007399_0.585\|GO:0006139_0.584\|GO:0016070_0.584\|GO:0090304_0.584\|GO:0032774_0.583\|GO:0034654_0.583\|GO:0141187_0.583\|GO:0009889_0.580\|GO:0010556_0.580\|GO:0031326_0.580\|GO:0019219_0.579\|GO:0003677_0.576\|GO:0010468_0.576\|GO:0030154_0.576\|GO:0043565_0.576\|GO:0048869_0.576\|GO:0051252_0.576\|GO:0006351_0.574\|GO:2001141_0.572\|GO:0006355_0.570\|GO:0003690_0.549\|GO:1990837_0.549\|GO:0016020_0.534	IPR001356+53-113_55-117_56-112_56-114+\|IPR009057+50-117+\|IPR017970+88-111+\|IPR050649+22-267+	SM00389+55-117+	PF00046+56-112+Homeodomain	G3DSA:1.10.10.60:FF:000679+57-116+Homeobox_protein_aristaless	PTHR24329+22-267+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-63;248-334	1.000	64-247	2m0c_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.673	37596.380	6.189	-3.000	26.048	14.671	52.994	47.006	13.772	12.275	49.102

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	green	1628.607	163.006	521.055	211.173	60.715	34.497	65.581	72.930	5376.192	2669.654	3829.599

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.445	0.236	-1.192	-1.832	-0.800	0.935	0.983	—	—	-4.576	-5.285	—	—

No JSON data available for plots.

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