Hg_chrom1_TN10mRNA_954
Organism: Heterodera glycines Gene Locus: chr1:12305229-12309650 Feature type: polypeptideProtein Sequence
Length: 502
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.625 | 1.39 | 1.159 | 0.687 | 1.328 | 0.97 | 0.711 | 0.896 | 1.062 | 1.238 | 0.483 | 1.406 | 1.549 | 0.996 | 1.87 | 0.911 | 0.784 | 1.087 | 0.919 | 0.527 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_913
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.630
|
0.207
|
0.014
|
0.474
|
0.075
|
0.085
|
0.110
|
0.149
|
0.147
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005800
|
1.000
|
1.000
|
Hsc_gene_4369.t1
|
Hsc_gene_4369.t1
|
— |
Q4AC99.3 Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 [Homo sapiens]
|
ACU81119.1 ACC synthase-like protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0009058|GO:0030170
|
GO:0008150_0.839|GO:0003674_0.758|GO:0009987_0.753|GO:0008152_0.669|GO:0044237_0.643|GO:0003824_0.571|GO:0009058_0.559|GO:0044249_0.550|GO:0044238_0.532
|
IPR004838+264-277+|IPR004839+65-419+|IPR015421+59-313+|IPR015422+25-418+|IPR015424+26-423+|IPR050478+83-430+
|
— |
PF00155+65-419+Aminotransferase_class_I_and_II
|
— |
PTHR43795+83-430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;418-502
|
1.000
|
2-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
57363.930
|
5.573
|
-5.500
|
28.486
|
10.359
|
49.402
|
50.598
|
14.143
|
14.343
|
49.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
1143.783
|
1435.534
|
1201.479
|
1140.232
|
1222.649
|
1162.955
|
1296.092
|
3093.077
|
494.274
|
676.340
|
598.312
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.486
|
-0.469
|
— | — | — |
0.166
|
1.307
|
-1.113
|
— | — | — | — | — |
No JSON data available for plots.