Hg_chrom1_TN10mRNA_955
Organism: Heterodera glycines Gene Locus: chr1:12311324-12313395 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 1.046 | 1.203 | 1.095 | 1.146 | 1.289 | 0.535 | 0.926 | 0.823 | 1.895 | 0.641 | 0.778 | 1.911 | 0.814 | 1.188 | 1.134 | 0.607 | 0.802 | 0.611 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_914
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.781
|
0.302
|
0.022
|
0.356
|
0.100
|
0.119
|
0.054
|
0.021
|
0.118
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005801
|
1.000
|
1.000
|
Hsc_gene_4366.t1
|
Hsc_gene_4366.t1
|
— | — |
KAI1729829.1 sister chromatid cohesion protein [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007064|GO:0031390
|
GO:0008150_0.939|GO:0005575_0.907|GO:0110165_0.899|GO:0009987_0.885|GO:0005622_0.855|GO:0065007_0.845|GO:0003674_0.836|GO:0050789_0.826|GO:0016020_0.813|GO:0050794_0.807|GO:0043226_0.786|GO:0008152_0.782|GO:0044238_0.764|GO:0071840_0.761|GO:0044237_0.756|GO:0016043_0.753|GO:0043229_0.752|GO:0043227_0.750|GO:0009058_0.748|GO:0043170_0.748|GO:0048518_0.746|GO:0048522_0.739|GO:0044249_0.735|GO:0019538_0.734|GO:0019222_0.729|GO:0009059_0.726|GO:0003824_0.725|GO:0006139_0.719|GO:0031323_0.719|GO:0043231_0.718|GO:0006996_0.717|GO:0060255_0.715|GO:0080090_0.713|GO:0009893_0.708|GO:0034654_0.707|GO:0090304_0.707|GO:0036211_0.706|GO:0043412_0.706|GO:0009889_0.705|GO:0010556_0.705|GO:0031326_0.705|GO:0031325_0.700|GO:0141187_0.699|GO:0010604_0.698|GO:0009891_0.694|GO:0010557_0.693|GO:0031328_0.693|GO:0016740_0.690|GO:0019219_0.690|GO:0065009_0.690|GO:0007049_0.687|GO:0022402_0.686|GO:0050790_0.686|GO:0045935_0.682|GO:0043687_0.681|GO:0006259_0.680|GO:0044093_0.678|GO:0043085_0.677|GO:0051276_0.676|GO:0071897_0.675|GO:0006260_0.674|GO:0051338_0.674|GO:0003887_0.670|GO:0006261_0.670|GO:0006275_0.670|GO:0006473_0.670|GO:0007062_0.670|GO:0007064_0.670|GO:0016772_0.670|GO:0016779_0.670|GO:0034061_0.670|GO:0034086_0.670|GO:0034088_0.670|GO:0034421_0.670|GO:0043543_0.670|GO:0051052_0.670|GO:0051054_0.670|GO:0051347_0.670|GO:0090329_0.670|GO:0140097_0.670|GO:0140640_0.670|GO:1900262_0.670|GO:1900264_0.670|GO:2000278_0.670|GO:2000573_0.670|GO:0032991_0.654|GO:0005634_0.611|GO:0043228_0.609|GO:0043232_0.609|GO:0031974_0.582|GO:0043233_0.582|GO:0070013_0.582|GO:0031981_0.572|GO:0005654_0.564|GO:0140513_0.559|GO:0005694_0.551|GO:0000785_0.547|GO:0000775_0.545|GO:0098687_0.545|GO:0031390_0.540
|
IPR019128+18-364_20-344+
|
— |
PF09724+20-344+Sister_chromatid_cohesion_protein_Dcc1
|
— |
PTHR13395+18-364+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-378
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
42579.560
|
4.876
|
-9.500
|
25.397
|
11.111
|
46.561
|
53.439
|
11.905
|
13.492
|
47.884
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
539.354
|
828.735
|
725.061
|
651.431
|
641.674
|
582.063
|
785.193
|
557.532
|
387.973
|
279.309
|
325.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.422
|
-0.484
|
— | — | — |
0.442
|
— |
0.637
|
— | — | — | — | — |
No JSON data available for plots.