Hg_chrom1_TN10mRNA_956
Organism: Heterodera glycines Gene Locus: chr1:12313542-12314846 Feature type: polypeptideProtein Sequence
Length: 231
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.208 | 1.409 | 1.181 | 0.746 | 1.082 | 0.666 | 0.618 | 1.299 | 0.866 | 1.58 | 0.59 | 1.273 | 0.842 | 0.666 | 0.707 | 1.422 | 0.852 | 1.246 | 0.666 | 0.637 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_915
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.818
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
19-54
|
0.997
|
— | — |
0.000
|
— | — |
0.731
|
0.072
|
0.050
|
0.456
|
0.237
|
0.097
|
0.160
|
0.028
|
0.050
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005802
|
1.000
|
1.000
|
Hsc_gene_4365.t1
|
Hsc_gene_4365.t1
|
— |
O70378.1 ER membrane protein complex subunit 8 [Mus musculus]
|
KAH7721956.1 neighbor of COX4-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0072546
|
GO:0005575_0.866|GO:0110165_0.860|GO:0005622_0.795|GO:0005737_0.785|GO:0016020_0.760|GO:0043226_0.718|GO:0043229_0.702|GO:0043227_0.697|GO:0043231_0.683|GO:0008150_0.674|GO:0009987_0.606|GO:0071944_0.560|GO:0005886_0.544
|
IPR005366+17-229_18-222+
|
— |
PF03665+18-222+Uncharacterised_protein_family_(UPF0172)
|
— |
PTHR12941+17-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
25004.190
|
4.526
|
-10.000
|
22.944
|
8.658
|
46.753
|
53.247
|
9.957
|
12.987
|
57.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
819.238
|
722.662
|
812.217
|
873.623
|
1102.044
|
772.328
|
923.709
|
623.721
|
797.880
|
799.394
|
798.745
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.137
|
0.213
|
0.303
|
-0.498
|
0.269
|
-0.413
|
0.710
|
— | — | — | — | — |
No JSON data available for plots.