Hg_chrom1_TN10mRNA_957
Organism: Heterodera glycines Gene Locus: chr1:12314991-12316315 Feature type: polypeptideProtein Sequence
Length: 117
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.795 | 1.554 | 0.0 | 1.282 | 2.192 | 0.611 | 0.427 | 0.38 | 1.502 | 1.295 | 1.508 | 1.662 | 0.657 | 2.093 | 0.488 | 0.28 | 0.907 | 1.315 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_916
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion|endoplasmic_reticulum
|
— |
RRKAEMDAKREQFRGKRE,KREQFRGKREQLIKRLEK
|
— | — | — | — | — | — |
0.001
|
— | — |
0.210
|
0.787
|
0.263
|
0.169
|
0.655
|
0.084
|
0.189
|
0.049
|
0.101
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005803
|
1.000
|
1.000
|
Hsc_gene_4364.t1
|
Hsc_gene_4364.t1
|
— | — |
EPB74673.1 aminoacyl-tRNA hydrolase [Ancylostoma ceylanicum]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.936|GO:0110165_0.935|GO:0008150_0.909|GO:0009987_0.874|GO:0005622_0.866|GO:0016020_0.853|GO:0043226_0.821|GO:0043229_0.804|GO:0005737_0.784|GO:0071840_0.760|GO:0043227_0.758|GO:0016043_0.747|GO:0043231_0.738|GO:0044085_0.702|GO:0006996_0.701|GO:0022607_0.694|GO:0043933_0.690|GO:0065003_0.689|GO:0007005_0.680|GO:0005739_0.674|GO:0033108_0.674|GO:0097250_0.674|GO:0008535_0.670|GO:0017004_0.670|GO:0033617_0.670
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-117
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
13796.720
|
9.923
|
3.500
|
35.897
|
10.256
|
52.991
|
47.009
|
19.658
|
16.239
|
39.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightgreen
|
469.618
|
528.284
|
359.294
|
351.248
|
441.317
|
329.653
|
466.205
|
333.849
|
57.634
|
957.659
|
571.934
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.786
|
-0.726
|
— |
0.297
|
-0.406
|
0.510
|
— |
0.624
|
-4.196
|
— | — | — | — |
No JSON data available for plots.